Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00499 ATGAGAAGTCTAGAAGAGAAACTTATTAAGCTCATAATTTTATCATCAACAACTTTGTTTGTGGTGGCAGCGACGGTGAAGGCGTCGTTTACAGGCTGCGACGAACAGTGTGGGAACTTGAAAATTCCATATCCGTTCGGGATCAAGGAAGGGTGTTATCATAACGAAAATTTCTCAATTACTTGCAACAAAACTCGTTATAATCCACCAAAAGCATTTCTAAAAGACACCGACATAGGTATCACCAATATATCCATAATCGAAGGCCAGCTCCACATCTTGCAATCCATAGCCAAAGATTGCTACACAAAAAATGGTACTCCTGAATCCAACGATCCCACTTTCCAACTCTTCAGTTTCACAATTTCCAACACCATGAACAAGTTCACAGTCATTGGCTGCGATACTTACGCTTTTATTTCTGGTGAACTTGAGGGAGAATCCTACATAAGTGGGTGCATGACGTTATGTGGAAACAGTACTGAAACTATAAGAGATGGGTCGTGCTCTGGGAGTGGGTGCTGTCAGTTGGAGATTCCTAGAGGCCTAAAAAATTTGGACGTTGAGGTTAAAAGCTTCGACAATCATAGTAAGGAAACTATACTTGCCATTGTCCTAAGAACCATAAAGGAGATGGCAGAGTTGGAGGAGAAGGCTGCACTCAGAGCTTCGTGTCTTCAATTCATTATTATATCATCATCGGAAAATGGAGGTTTGATACTTCAACAACATATTTCTGAATGGAAATCACCCGACATCCTCAAAATTTTCACACAAGAAGAGTTAGAGAAAGCTACAAACAAGTACGACGAAAGCGCAGTGGTTGGCAAAGGTAGTTACGGTACTGTTTACAAAGGAGTCTTAGACGACCGTTCCACAGTTGCAATCAAAAAATCAAAATTAGTGAACCAATCCCAAACTGACCAATTTATTAACGAAGTCATCGTTCTGTCTCAAATCAACCATCGCAACGTCATCAAACTCATAGACTGTTGTTTGGAGACAAAGGTTCCATTGTTGGTGTACGAGTTCGTAACCAACGGCACACTCTTTGAACACATCCACCGCAAAACCGACCAAGTTTATCTTCCATGGGAAGCTCGCTTGAAAATAGCTTCGAAAATTGCCAGCGTCGTTTCATATTTGCATTCTTCCGCTTCTACTCCAATTATCCATAGAGATATCAAGTCCAATAATATACTTTTGGACCAAAAGTACACAGCAAGAGTCTCTGATTTTGGTACATCAAAGCTTGTTCCGTTGGATCGAACTCAAATATCCACAATGGTGCAAGGGACTATTGGATATTTAGATCCAGAATATTTGTTGACGAGTGAGTTGACGGAGAAAAGCGATGTGTACAGCTTTGGAATTGTGCTTATGGAGCTTATAACGGGGAAGAAGGCGGTGTGTTTTGATGGGCCAGAAGAAGAGAAGAATCTAGCGATGTATGTGTTGTATGCAATGGAAGAAGATAGTGTGGAAGAAGTTGTGGAGAAGGGAATGGCGACAGAAGGAAATTTTGAGCATATAAAAGAAGTGGCAAAACTAGCAAGAGAGTGTGTGAGAGTAAAAAGGGAGGAGCGACCCAACATGAAGAAGGTAGCTATGGTGTTAGAGGGACTGAGACAAATGCAGCAGGTTGAATTCTATTCATGGGATAGAAACGATTTGTTTGATGGAGCTTAA 1689 41.09 MRSLEEKLIKLIILSSTTLFVVAATVKASFTGCDEQCGNLKIPYPFGIKEGCYHNENFSITCNKTRYNPPKAFLKDTDIGITNISIIEGQLHILQSIAKDCYTKNGTPESNDPTFQLFSFTISNTMNKFTVIGCDTYAFISGELEGESYISGCMTLCGNSTETIRDGSCSGSGCCQLEIPRGLKNLDVEVKSFDNHSKETILAIVLRTIKEMAELEEKAALRASCLQFIIISSSENGGLILQQHISEWKSPDILKIFTQEELEKATNKYDESAVVGKGSYGTVYKGVLDDRSTVAIKKSKLVNQSQTDQFINEVIVLSQINHRNVIKLIDCCLETKVPLLVYEFVTNGTLFEHIHRKTDQVYLPWEARLKIASKIASVVSYLHSSASTPIIHRDIKSNNILLDQKYTARVSDFGTSKLVPLDRTQISTMVQGTIGYLDPEYLLTSELTEKSDVYSFGIVLMELITGKKAVCFDGPEEEKNLAMYVLYAMEEDSVEEVVEKGMATEGNFEHIKEVAKLARECVRVKREERPNMKKVAMVLEGLRQMQQVEFYSWDRNDLFDGA 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12863805 12867335 + Lsi08G004990.1 Lsi08g00499 668425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00499 562 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 18 198 IPR045274 GO:0007166
Lsi08g00499 562 CDD STKc_IRAK 275 542 - -
Lsi08g00499 562 ProSitePatterns Protein kinases ATP-binding region signature. 275 298 IPR017441 GO:0005524
Lsi08g00499 562 Pfam Protein kinase domain 269 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00499 562 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 235 557 - -
Lsi08g00499 562 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 18 198 - -
Lsi08g00499 562 ProSiteProfiles Protein kinase domain profile. 269 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00499 562 SUPERFAMILY Protein kinase-like (PK-like) 246 540 IPR011009 -
Lsi08g00499 562 Pfam Wall-associated receptor kinase galacturonan-binding 33 92 IPR025287 GO:0030247
Lsi08g00499 562 Gene3D Transferase(Phosphotransferase) domain 1 345 557 - -
Lsi08g00499 562 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 235 557 IPR045274 GO:0007166
Lsi08g00499 562 SMART serkin_6 269 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00499 562 Gene3D Phosphorylase Kinase; domain 1 251 344 - -
Lsi08g00499 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 390 402 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00499 Lsi-Chr8:12863805 Lsi08g00484 Lsi-Chr8:12676750 2.50E-60 dispersed
Lsi08g00497 Lsi-Chr8:12840607 Lsi08g00499 Lsi-Chr8:12863805 9.83E-128 proximal
Lsi08g00499 Lsi-Chr8:12863805 Lsi08g00502 Lsi-Chr8:12934848 3.58E-97 proximal
Lsi08g00498 Lsi-Chr8:12848047 Lsi08g00499 Lsi-Chr8:12863805 1.83E-35 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83828 PF00069 Pkinase 4.60E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00499 - - csv:101209380 484.567