Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00502 ATGAGAAGTCTAGAAGAGAAGCTTATTAAGCTCATAATTTTATCATCAGCAACTTTGTTTGTGGTGGCAGTGACGGAGAAGGCGTCGTTTACGGGATGCGATGAACGGTGTGGGAACTTGAAAATTCCATATCCGTTCGGGATCAAGGAAGGGTGTTATCATAACAAAGATTTCTCCATTACTTGCAACAATGACCATCCACCAAAAGCATTTCTAGGAGACAGCGAGATAGGTGTCACCAATATATCCATAATCGAAGGCCAGCTCCACATCTTGCACTACGTAGCCGCAGATTGCTACACAAAAAATGGTTTTCGTGAATCCAACAGAACCGCTCTCACACTCTCCAAGTTCACAATTTCCAACACAATGAACAAGTTCACAGTCATTGGCTGTGATACTTACGCTTTTATTTCTAGTGATGTTGAAGGAGAATCCTACTTAAGTGGGTGCATGGCGTTCTGTACTAAAGACAGTACTAAAACTATAAGAGATGGGTCCTGCTCTGGGAGTGGGTGTTGTCAGTTGGAGATTCCTAAAGGCCTAAAATATTTGGGGGTTGAGATGGGTAGAATCAACTATTCTAAAATATCTAATGAAAATCAATGTGGGTATGCTTTTGTAATCCAACAAGACGAATTCAATTTCTCCAAAAACGATATTCATAATTTTACACGAGAGAAAGTTCCATTGGTGCTTGATTGGGCCATCCCTACCAATAAGTCTTGCTTAGAGCAGGCTAAGAACGAAAGCAATTGCAATATATGTGGACCAGAAGCCCATAAGATTAACTTTATCGATGATGAAACTGAATATCGTTGCCAGTGTCGGGAAGGCTTTGAGGGAAATCCATATCTCTCTCAAGGTTGCCAAGGTAAAATTATTCTCTCTCTTTTCCAAACTTTTTACACTGGTATATGGTTATACTTGGGTTACAAAAAGTGGAAATTTATCCAACAAAAAGAGAAGTTTTTTAAGGAAAATGGAGGTTTGATACTTCAACAACATATTTCTGAATGGAAATCACCCAACATCCTCAAAATTTTCACACAAGAAGAGTTGGAGAAAGCTACAAACAAGTACGACGAAAGCGCAGTGGTTGGCAAAGGTGGTTACGGTACTGTTTATAAAGGAGTCTTAGACGGCAATTCCACAATTGCAATCAAAAAATCAAAATTAGTGAACCGATCCCAAACTGACCAATTTATTAACGAAGTCATTGTTCTATCCCAAATCAACCATCGCAACGTCGTCAAACTCATAGGCTGTTGTTTGGAGACAAGGGTTCCATTGTTGGTGTACGAGTTTGTAACCAACGGCACACTCTTTGAACACATCCACCGCAAAACCGACCAAGTTTATCTTCCATGGGAAGCTCGCTTGAAAATAGCTTCGGAAATTGCCAGCGTCATTTCATATTTGCATTCTTCCGCTTCTACTCCAATTATCCATAGAGATATCAAGTCCAATAATATACTTTTGGACCAAAACTACACAGCAAAAGTCTCTGATTTCGGAACGTCAAAGCTTGTTCCGTTGGATCAAATTCAAATATCCACAATGGTGCAAGGGACTATTGGATATTTGGATCCAGAATATTTTTTGACGAGTGAGTTGACGGAGAAAAGTGATGTGTACAGCTTTGGAATTGTGCTTATGGAGCTTATAACGGGAAAGAAGGCGGTGTGTTTTGATGGGCCAGAAGAAGAGAGGAATCTAGCGATGTATGTGTTGTACGCAATGGAAGAAGATCGTGTGGAAGAAGTTGTGGAGAAGGGAATGGCGACAGAAGGAAATTTTGAGCAAATAAAAGAAGTGGCAAAACTAGCAAGAGAGTGTGTGAGAGTAAAAAGGGAGGAGCGACCCAGCATGAAGAAGGTAGCTATGGTGTTAGAGGGACTGAGACAAACGCAGCAGGTTGAGTTCTATTCATGGGATAGAAACGATTTGTTTGATGGAGCTTCAAACTCAAGTCAATTTGTTACCAATGATATGGACGATAGCATGAAGGCAGAGGATTTAAGACTTGTCCAGGATGGAAGATGA 2046 40.47 MRSLEEKLIKLIILSSATLFVVAVTEKASFTGCDERCGNLKIPYPFGIKEGCYHNKDFSITCNNDHPPKAFLGDSEIGVTNISIIEGQLHILHYVAADCYTKNGFRESNRTALTLSKFTISNTMNKFTVIGCDTYAFISSDVEGESYLSGCMAFCTKDSTKTIRDGSCSGSGCCQLEIPKGLKYLGVEMGRINYSKISNENQCGYAFVIQQDEFNFSKNDIHNFTREKVPLVLDWAIPTNKSCLEQAKNESNCNICGPEAHKINFIDDETEYRCQCREGFEGNPYLSQGCQGKIILSLFQTFYTGIWLYLGYKKWKFIQQKEKFFKENGGLILQQHISEWKSPNILKIFTQEELEKATNKYDESAVVGKGGYGTVYKGVLDGNSTIAIKKSKLVNRSQTDQFINEVIVLSQINHRNVVKLIGCCLETRVPLLVYEFVTNGTLFEHIHRKTDQVYLPWEARLKIASEIASVISYLHSSASTPIIHRDIKSNNILLDQNYTAKVSDFGTSKLVPLDQIQISTMVQGTIGYLDPEYFLTSELTEKSDVYSFGIVLMELITGKKAVCFDGPEEERNLAMYVLYAMEEDRVEEVVEKGMATEGNFEQIKEVAKLARECVRVKREERPSMKKVAMVLEGLRQTQQVEFYSWDRNDLFDGASNSSQFVTNDMDDSMKAEDLRLVQDGR 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12934848 12938468 + Lsi08G005020.1 Lsi08g00502 668428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00502 681 CDD STKc_IRAK 367 634 - -
Lsi08g00502 681 Pfam Wall-associated kinase 166 247 IPR013695 GO:0004674|GO:0016021
Lsi08g00502 681 Pfam Protein tyrosine and serine/threonine kinase 366 629 IPR001245 GO:0004672|GO:0006468
Lsi08g00502 681 Gene3D Transferase(Phosphotransferase) domain 1 437 653 - -
Lsi08g00502 681 Pfam Wall-associated receptor kinase galacturonan-binding 33 91 IPR025287 GO:0030247
Lsi08g00502 681 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 305 650 IPR045274 GO:0007166
Lsi08g00502 681 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 290 IPR045274 GO:0007166
Lsi08g00502 681 ProSitePatterns Protein kinases ATP-binding region signature. 367 390 IPR017441 GO:0005524
Lsi08g00502 681 Gene3D Phosphorylase Kinase; domain 1 342 436 - -
Lsi08g00502 681 ProSiteProfiles Protein kinase domain profile. 361 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00502 681 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 305 650 - -
Lsi08g00502 681 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 20 290 - -
Lsi08g00502 681 SMART serkin_6 361 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00502 681 SUPERFAMILY Protein kinase-like (PK-like) 338 632 IPR011009 -
Lsi08g00502 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00492 Lsi-Chr8:12807446 Lsi08g00502 Lsi-Chr8:12934848 0 dispersed
Lsi08g00495 Lsi-Chr8:12813208 Lsi08g00502 Lsi-Chr8:12934848 0 dispersed
Lsi08g00497 Lsi-Chr8:12840607 Lsi08g00502 Lsi-Chr8:12934848 0 dispersed
Lsi08g00498 Lsi-Chr8:12848047 Lsi08g00502 Lsi-Chr8:12934848 7.86E-50 dispersed
Lsi08g00499 Lsi-Chr8:12863805 Lsi08g00502 Lsi-Chr8:12934848 3.58E-97 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83829 PF07714 PK_Tyr_Ser-Thr 6.80E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00502 - - cmos:111461403 760.755