Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00505 ATGTCTACCAATGCTGCTGCTTGTGCCGAGAGAGCAACAAATGATGTGCTTATCGCTCCTGATTGGGCCATAAATATTGAGCTCTGTGACATTATTAACATGGATCCTAGGCAAGCGAAGGATGCATTGAAAATACTCAAGAAGCGTCTGGCTAGCAAAAATCCTAAAATACAACTTCTAGCGCTCCATGCATTGGAGGCTCTAAGCAAAAATTGTGGCAATACTGTTTTTAAGCTGATCATAGATCGTAGTATCCTGCACGAAATGGTTAAAATTGTAAAGAAGAAGGTATCTACTAACCTTGGCATGAATCTAACATGTTGGTGGTGTGGTTTGGTATACATCGCAAATCTAGACAGGACACAGCCTGATTCAACTGTACGGGACAAAATATTAACTTTGGTAGATGCATGGCAAGCGGCATTTGGTGGTGACTCCAAGGGAAAGTATCCACAGTACTATGCAGCCTACAATGAATTGAAGAATGCTGGATTTCAATTTCCACCAAGGGAAGAAAATGTTGGGCAATTCTTTAGTTCACCTCAGATACAGCCAGTCATTGAGCACCCTGTTTCAGCTTTTGATGATTTTGATGCTCAGGTTTCTCTCCAGTCTGATTCTTCTGGTTTAAGCAAGGGGCTATTTAGTGTTCTCAGTAACTTGCGTGCCTTCATCATGAGTTTCGATCCAATGTGTCGGTCTACTTCATTCTTCTTCCTCAAGTCTAGTAGTTTATTTTCTATTTGCCATTGCCTCTCCGGATTTGACTCTGATTATTGTAATTTGAACTTAAACAGCTTGCCAGAAATTCAAAACGCACAGGGACTAGCAGATGTTTTATTGGAAATGCTTGGTGCGTTGGACCCTAAGACTCCAGAGGTATTCCTCAAGATAAAATGGAAGACAAATGATTTTGAATTGTCAACTTTAGATAAATTTAGGCTTTTTGACTTCTATATTTATTCTCCCAAACCAATAGGACCGGCTTTGAAGCAAGAAGTGATCATTGATCTTGTTGATCAATGTCGTTCCTACCACAGCCGTGTCGTGATACTTGTTAATGAGACCACAGATGAGGAACTTTTATGTCAAGGATTGGTGTTGAATGACAGTCTGCAGCGTGTACTCAGCTACCATGATGACATTGTGAAAGGAACATTTACGACAGAAGCTAGAAGAGCAGACCTTCCTGTTCCATCGGTTCCATATATCAACCCTGAGGACGACGAGTCGGAAGATGACTTTACACCATTATCTCGCAGGCCAACGAGAGATCACACTTATGAAAGGGACAGAAAATTGGCAAATGGTCAATCATCTCGAGTAAGTCCACTTCCTTCACCCTCAGCAAAGAAGATGGCTGGTGCGGAAATGATCGATCATCTTAGTGGCGACGTGTACAAAACTGAAGGGTCTCCAAGGATAGTAGAGCTACCATCAACTTCTTCTTCTTCACCTTTCTACACTAGCCAGCCTTTGTTCGACGAACCACCTCCAAGAAGCATATCCACCAATCCACTCCCCGCAACACCTCGAGATGCTCAATCTCCGAGCGCCCTCCCTCCTCCACCCTCAAGATATAATCAAAGACAACAATATTTTGAGCAACAGAAAGCTGTTACAGGAGGCAGTCAGCCCCATTTGAGCAACGATTATAGTTCTTATGACAACATAGTGGGGAATACCAAGAATCTTTCACTCAGTCCTACCCCAACCAGATCTGCAGAGCATGAAGAGGCCCTTTTCAAAGATCTGGTGGATTTTGCCAAGGCCAAGTCATCTTCATCCTCCAAATCCAACCGACCGTTCTGA 1812 42.88 MSTNAAACAERATNDVLIAPDWAINIELCDIINMDPRQAKDALKILKKRLASKNPKIQLLALHALEALSKNCGNTVFKLIIDRSILHEMVKIVKKKVSTNLGMNLTCWWCGLVYIANLDRTQPDSTVRDKILTLVDAWQAAFGGDSKGKYPQYYAAYNELKNAGFQFPPREENVGQFFSSPQIQPVIEHPVSAFDDFDAQVSLQSDSSGLSKGLFSVLSNLRAFIMSFDPMCRSTSFFFLKSSSLFSICHCLSGFDSDYCNLNLNSLPEIQNAQGLADVLLEMLGALDPKTPEVFLKIKWKTNDFELSTLDKFRLFDFYIYSPKPIGPALKQEVIIDLVDQCRSYHSRVVILVNETTDEELLCQGLVLNDSLQRVLSYHDDIVKGTFTTEARRADLPVPSVPYINPEDDESEDDFTPLSRRPTRDHTYERDRKLANGQSSRVSPLPSPSAKKMAGAEMIDHLSGDVYKTEGSPRIVELPSTSSSSPFYTSQPLFDEPPPRSISTNPLPATPRDAQSPSALPPPPSRYNQRQQYFEQQKAVTGGSQPHLSNDYSSYDNIVGNTKNLSLSPTPTRSAEHEEALFKDLVDFAKAKSSSSSKSNRPF 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12963820 12968069 - Lsi08G005050.1 Lsi08g00505 668431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00505 603 ProSiteProfiles GAT domain profile. 296 384 IPR004152 GO:0035091|GO:0043130
Lsi08g00505 603 PANTHER TOM1-LIKE PROTEIN 4 328 602 - -
Lsi08g00505 603 PANTHER TOM1-LIKE PROTEIN 4 266 293 - -
Lsi08g00505 603 PANTHER TOM1-LIKE PROTEIN 4 1 211 - -
Lsi08g00505 603 CDD VHS 10 162 - -
Lsi08g00505 603 SMART VHS_2 5 164 IPR002014 GO:0035091|GO:0043130
Lsi08g00505 603 Gene3D - 1 168 IPR008942 -
Lsi08g00505 603 Gene3D - 265 391 IPR038425 -
Lsi08g00505 603 Pfam GAT domain 329 385 IPR004152 GO:0035091|GO:0043130
Lsi08g00505 603 ProSiteProfiles VHS domain profile. 12 168 IPR002014 GO:0035091|GO:0043130
Lsi08g00505 603 SUPERFAMILY GAT-like domain 328 385 - -
Lsi08g00505 603 MobiDBLite consensus disorder prediction 414 436 - -
Lsi08g00505 603 Pfam VHS domain 9 99 IPR002014 GO:0035091|GO:0043130
Lsi08g00505 603 MobiDBLite consensus disorder prediction 398 453 - -
Lsi08g00505 603 MobiDBLite consensus disorder prediction 475 572 - -
Lsi08g00505 603 PANTHER TOM1-LIKE PROTEIN 328 602 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lsi08g00505 603 PANTHER TOM1-LIKE PROTEIN 266 293 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lsi08g00505 603 PANTHER TOM1-LIKE PROTEIN 1 211 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lsi08g00505 603 SUPERFAMILY ENTH/VHS domain 8 169 IPR008942 -
Lsi08g00505 603 MobiDBLite consensus disorder prediction 475 491 - -
Lsi08g00505 603 MobiDBLite consensus disorder prediction 525 572 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00505 - - - csv:101219096 748.043
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00505 Lsi-Chr8:12963820 Lsi11g00996 Lsi-Chr11:16758360 9.20E-148 dispersed
Lsi08g00505 Lsi-Chr8:12963820 Lsi04g02339 Lsi-Chr4:30591686 4.84E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g185 Blo01g01314 Blo12g01115 Bda01g00684 . Bpe02g00621 Bpe04g00015 Bma04g00022 Bma01g02098 . Cmo15g00650 . . . . . . . Bhi04g01843 Tan11g1214 . . . . . Cla08g00646 Cam08g1070 Cec08g0655 Cco08g0766 Clacu08g0775 . Cre08g0583 Cone4ag1441 . Cone17ag0809 Cone20ag0414 . Csa04g01732 . Cme03g00439 . . . . . . . . . . . . . Car04g02322 Car15g00588 Cpe01g02087 Cpe02g00872 . . . . . . . . . . . . . . Lsi08g00505 . Chy03g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001242 1 5 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 4 4 2 2 2 1 2 2 3 2 5 3 1 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00505 Lsi_Chr08 FPKM 5.125683 7.355777 3.550104 3.552137 0.284821 0.123636 0.0 25.092243 26.403761 25.285624