Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00508 ATGCACCTCCTGCTAAATAAACTTCGTGGTGCACACAAAGCTTCGCTTTCTCATTACTCTTATCTGATAGACCACTGTTTAGCGCTTGGATCTGTTCATATTGCCAAAACAATCCACGCTCAGTTGCTAAAGCTTGGCCTTGACAGCAATACTTTTCTGGGCAATCGCCATCTTCAGCTATACGCGCTATTTGGTCCTGTCCATGACGTATTGAAAGTATTTGATGACATCAAAGACAAGAATATTATATCCTGGAACATATGCTTGAAGGGTCTGTTTAGATTTTGCGATGTCGAAGGTGCCCGCCATCTGTTCGATGTAATGCCTGAGAAGGACATTGTTTCTTGGAACTCTATGATCTCTGGCTATGTTTCATCTGGATTTGCTAATAATGCTATGGGCGTTTTTCTGGAAATGCAAAATGCTGGTTTTAGACCAAGTGAGTATACCTTCTCCATTTTGCTTTCACTTGTGTCGTCTGCTTTTCATGGTAAGCAAGTTCATGGCAGTATGATTCGAAGTGGTGTGGATGTGTCAAGTGTGGTGCTTGGGAATTCGTTGATTGATATGTATGGAAAAGTTGGCCTCGTTGATTATATGTTTGCCATATTTTCTAGTATGGAAAAGGTGGATGTTATCTCTTGGAACTCTTTGATTTTAGGCTGCCATAGATCAGGCTTTAGAGTATTGGCACTCAATCAGTTCTTTCTAATGAGAACCACTGAGCACTCTCCTGATCAGTTCACTATATCAATGGTGATCAGTATCTGTTGTTGCCTCCAAGAGTTGGAACTGGGTAAGCAAATTTTTGCTTTCTGTTTCAAGATGGGATTTACTTCTAACAGCATTGTACTTAGTGCTACAATTGACTTGTTTTCCAAATGCGACAGCTTGAAGGTTGCAGTGCAGCTTTTTGAAGAAACCAATCAATGGGATCGAGCTCTTTGTAATGTCATGATCTCAAGCTTTGCATGGCATGGTCATTGGAGGGATTCCATGTGGCTTTTTGTGTATGCCTTAAGGGAGAACCTCGGGCCAATTGAGATTACACTGAGCAGTATGCTGAGCTCCATTTCAGTTTTCACACCTGTGGAGTTGGGCTGTCAAATTCATAGTTTGGTTCTTAAGTTAGGTTTTGAGTCTGATGCCATTGTCTCTAGTTCGCTGGTAGACATGTATTCTAAAGTTGGATTAATTGATAATGCCATGAAAGTCTTTATAGATATGCCCGTTAGAGATTTGATATCTTGGAACACTATGATTATGGGTCTGGTTAACAATGGTAAATACTTTGAGGCCCTACACACTTATAATAAATTGGTCAAGGAAGGTGTACTGGCAGATAGGATAACACTAGCTGGAGTGTTATTAGCTTGCAGTTATGCTGGTTTTGTTGAGGAAGGGCTAGTCATCTTCTCTACAATGAGATATGAACATGGAGTCGTGCCAACGAATGAACATTATTCTTGTGTGGTGAACTTGCTCAGTCGAGCTGGTAAATTTGAAGAAGCAGTTAAAATTATCCAAACAACACCATACCAACCTACTTCTACATTTTGGACATCACTTCTTGGTGTCTGTGCAATTCATGGAGACCTAAAAGTCATTGAAAGAGTTGCAGAGAGGGTGATGACGCTGGAACCACAATCATCCCTACCGTATTCAGTGCTGGCTCAAGCTTATGCAATGAGAGCTCGATGGGAAAGCATGGTTCGTGTCAGGAAGACCTGGGAGAATATAGCTGCACAAAAGGTGAAGGCTTGCAGCTGGATTGTGATAAAAGACTATGCATATGCTTTTGAGGATGACCAATTACAACATCTGTGGAGAGAAAATTTCATTTCAGTGTTGGAATTAATTATCTGGGAGGTCGAATATGGGATTGTCTATGAATAG 1896 40.93 MHLLLNKLRGAHKASLSHYSYLIDHCLALGSVHIAKTIHAQLLKLGLDSNTFLGNRHLQLYALFGPVHDVLKVFDDIKDKNIISWNICLKGLFRFCDVEGARHLFDVMPEKDIVSWNSMISGYVSSGFANNAMGVFLEMQNAGFRPSEYTFSILLSLVSSAFHGKQVHGSMIRSGVDVSSVVLGNSLIDMYGKVGLVDYMFAIFSSMEKVDVISWNSLILGCHRSGFRVLALNQFFLMRTTEHSPDQFTISMVISICCCLQELELGKQIFAFCFKMGFTSNSIVLSATIDLFSKCDSLKVAVQLFEETNQWDRALCNVMISSFAWHGHWRDSMWLFVYALRENLGPIEITLSSMLSSISVFTPVELGCQIHSLVLKLGFESDAIVSSSLVDMYSKVGLIDNAMKVFIDMPVRDLISWNTMIMGLVNNGKYFEALHTYNKLVKEGVLADRITLAGVLLACSYAGFVEEGLVIFSTMRYEHGVVPTNEHYSCVVNLLSRAGKFEEAVKIIQTTPYQPTSTFWTSLLGVCAIHGDLKVIERVAERVMTLEPQSSLPYSVLAQAYAMRARWESMVRVRKTWENIAAQKVKACSWIVIKDYAYAFEDDQLQHLWRENFISVLELIIWEVEYGIVYE 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13009108 13011003 + Lsi08G005080.1 Lsi08g00508 668434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00508 631 Gene3D Tetratricopeptide repeat domain 263 361 IPR011990 GO:0005515
Lsi08g00508 631 Gene3D Tetratricopeptide repeat domain 163 262 IPR011990 GO:0005515
Lsi08g00508 631 Gene3D Tetratricopeptide repeat domain 364 463 IPR011990 GO:0005515
Lsi08g00508 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 146 IPR002885 -
Lsi08g00508 631 Gene3D Tetratricopeptide repeat domain 5 162 IPR011990 GO:0005515
Lsi08g00508 631 Gene3D Tetratricopeptide repeat domain 464 608 IPR011990 GO:0005515
Lsi08g00508 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Lsi08g00508 631 PANTHER OS07G0578800 PROTEIN-RELATED 4 628 IPR045215 GO:0003723|GO:0009451
Lsi08g00508 631 Pfam PPR repeat 415 445 IPR002885 -
Lsi08g00508 631 Pfam PPR repeat 316 336 IPR002885 -
Lsi08g00508 631 Pfam PPR repeat 185 209 IPR002885 -
Lsi08g00508 631 Pfam PPR repeat 487 508 IPR002885 -
Lsi08g00508 631 Pfam PPR repeat 387 412 IPR002885 -
Lsi08g00508 631 PANTHER OS03G0435200 PROTEIN 4 628 - -
Lsi08g00508 631 TIGRFAM PPR: pentatricopeptide repeat domain 83 114 IPR002885 -
Lsi08g00508 631 TIGRFAM PPR: pentatricopeptide repeat domain 114 148 IPR002885 -
Lsi08g00508 631 TIGRFAM PPR: pentatricopeptide repeat domain 415 448 IPR002885 -
Lsi08g00508 631 Pfam PPR repeat family 111 156 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00508 - - - csv:101210612 1132.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00508 Lsi-Chr8:13009108 Lsi11g00060 Lsi-Chr11:691144 4.93E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1173 . . . . . . . . Cmo04g02524 . . . . . . . . Bhi04g01837 . . . Hepe02g2102 . Lcy10g1297 . . . . . . . . . . Cone20ag0413 . . . . . . . . . . Bma01g00880 . . . . . . Car04g02324 . . . . . . . . . . . . . . . . . Lsi08g00508 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011857 1 2 0 0 1 1 1 1 1 1 1 1 1 0 1 1 2 0 1 1 1 1 1 1 1 1 2 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00508 Lsi_Chr08 FPKM 22.501522 19.71711 29.138193 28.503386 28.342562 25.305479 21.605967 46.349243 47.923065 46.922676