Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00510 ATGGTTGGTAAAGAAAACTTGAGGACTGAAGACTTGAACTTGTGCTTTGAGAAACTAATGATGCTTGTTGGTGGTGGTGATGGAATGGATGTTGGTGCTAAAGGAGTTAAAATGGATGGTGGGGTGATAGCAGGATGGAAGGACATTCCTATGGAGCTTCTCTTGCAAATTGTATCGCTTGTTGATGATCGAACTGTTATTGTAGCCTCAGGCGAATGGTGCAAGCTTGATTTTTCTAGCTACAAACTTATGACTGTTATTTTGTGCAAAAAGAACATGAACAACTTGGTCCTATCCCTTGTTCCTAAATTTGCAAGACTGCAAACTCTAATCTTGCGCCAGGATAAACCCCAGCTTGCAGACGATGCTGTTGAGACGATTGCTAGTAATTGTCGTGATTTGCAGGTCCTGGACCTGAGCAAAAGTTTCAAGCTTAGTGATCTTTCCCTATATGCTCTGGCTCATGGTTGTCGCGATCTTAAAAAACTGAATATTAGTGGTTGTACTGCATTCAGTGACACTGCACTGGCTTATCTGGCCAGTTATTGCAGAAAGCTAAAAGTTCTTAATCTTTGTGGATGTGTCAAGGCTGCATCTGACACTGCATTGCAGGCTATTGGACAATACTGTAATCATTTGCAATCTGTAAATCTTGGATGGTGTGAAAATGTGAGTGATGTGGGTGTGATGAGTTTGGCATATGGATGTCCCGATCTTCGAACCCTAGACTTGTGTGGTTGTGTCCTAATTACAGGTACATCTCTTAACTCAAATCAACAAATTCATGATAGTGTGATTGCTTTGGCAAATATGTGCCCTCATCTGAGGTCCCTTGGCCTCTACTATTGTCAAAATATAACAGACAGAGCAATGTATTCTTTAGCACATAGCTGTATAAAGAACAAACCCACAAAATGGGGAACAGGGAAAGGCAAGAATGACGACGATGGACTTCGAACTCTTAACATAAGCCAATGCACAGCTCTTACTCCCCCCGCCGTTCAGGCAGTTTGCGATTCATTTCCTGCTCTCCACACCTGCTCGGGTCGCCATTCTCTCATCATGAGTGGCTGTCTAAATTTGATGTCTGTGCATTGTGCTTGTGCAGTCCAAGCTCACCGTACTCTGACTGCTTTTCCTCATTCAGCTCATTGA 1155 42.94 MVGKENLRTEDLNLCFEKLMMLVGGGDGMDVGAKGVKMDGGVIAGWKDIPMELLLQIVSLVDDRTVIVASGEWCKLDFSSYKLMTVILCKKNMNNLVLSLVPKFARLQTLILRQDKPQLADDAVETIASNCRDLQVLDLSKSFKLSDLSLYALAHGCRDLKKLNISGCTAFSDTALAYLASYCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRTLDLCGCVLITGTSLNSNQQIHDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSCIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTLTAFPHSAH 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13020976 13024913 + Lsi08G005100.1 Lsi08g00510 668436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00510 384 SMART LRR_CC_2 157 182 IPR006553 -
Lsi08g00510 384 SMART LRR_CC_2 210 235 IPR006553 -
Lsi08g00510 384 SMART LRR_CC_2 104 130 IPR006553 -
Lsi08g00510 384 SMART LRR_CC_2 183 209 IPR006553 -
Lsi08g00510 384 SMART LRR_CC_2 318 340 IPR006553 -
Lsi08g00510 384 SMART LRR_CC_2 236 261 IPR006553 -
Lsi08g00510 384 SMART LRR_CC_2 131 156 IPR006553 -
Lsi08g00510 384 SMART LRR_CC_2 272 297 IPR006553 -
Lsi08g00510 384 PANTHER UNCHARACTERIZED 1 366 - -
Lsi08g00510 384 SUPERFAMILY RNI-like 73 343 - -
Lsi08g00510 384 Gene3D Ribonuclease Inhibitor 257 379 IPR032675 -
Lsi08g00510 384 PANTHER F-BOX SKP2A-LIKE PROTEIN 1 366 - -
Lsi08g00510 384 Pfam Leucine Rich repeat 272 295 IPR001611 GO:0005515
Lsi08g00510 384 Pfam Leucine Rich repeat 209 233 IPR001611 GO:0005515
Lsi08g00510 384 Gene3D Ribonuclease Inhibitor 199 256 IPR032675 -
Lsi08g00510 384 Gene3D Ribonuclease Inhibitor 55 198 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00510 K03875 SKP2, FBXL1; F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2) - csv:101220292 661.373
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00510 Lsi-Chr8:13020976 Lsi09g01373 Lsi-Chr9:21744192 1.68E-12 dispersed
Lsi08g00510 Lsi-Chr8:13020976 Lsi06g00089 Lsi-Chr6:897490 8.62E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1177 . Blo12g01113 . Bda03g00025 . Bpe04g00016 Bma04g00023 . Cmo04g02528 Cmo15g00645 . . . . . . Cpe13g00654 Bhi04g01835 Tan11g1207 . . Hepe02g2748 . Lcy10g1301 Cla08g00651 Cam08g1078 Cec08g0664 Cco08g0775 Clacu08g0782 . Cre08g0589 . Cone7ag1488 Cone17ag0806 Cone20ag0411 . . . Cme03g00431 Blo17g00229 Blo18g00227 . Bda13g01543 Bpe02g01595 Bpe14g00322 Bma01g00879 Bma02g00287 . . . . . Car04g02327 Car15g00586 . . . . . . . . . . . . . . . . Lsi08g00510 . Chy03g00570 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004343 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00510 Lsi_Chr08 FPKM 4.629108 2.998482 14.998787 13.663732 62.147312 51.067036 69.604271 16.360973 17.998348 18.652924