Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00511 ATGTCCTCGAGGGATTCTAACGTCCTCTTCAGTGGTGGCGGTATCAGTTTTCTCAATGAAAATCACACTGGAAAGTTCAGCTATGGATATTCTAGTTTCAAGGGCAAAAGGGCTTCGATGGAGGACTTCTATGAAACAAGAATTTCTGAAGTTGATGGGCAGATGGTCGCTTTTTTCGGTGTTTTTGATGGTAGGACCAATGGAGCATCAACCAGGAAAATTACTTATTCTGCAGTTGAGGTCTTTAAGCAGACCGATGCCGATTATATCAATGAAGAGAAAGGGCAGCAGAAGGATGCTGGGTCAACTGCATCAACTGCTGTACTGTTCGGGGATCGTCTCCTTGTTGCAAATGTTGGGGATTCCAGAGTAGTTGCATCTAGAGCTGGTTCAGCTATTCCCCTCTCTATTGATCACAAACCTGATAGATCAGATGAGCGCCAAAGGATTGAACAAGCTGGAGGGTTCATTCTTTGGGCAGGAACGTGGAGGGTTGGTGGTATTCTAGCAGTTTCACGTGCCTTTGGAGATAAGCTACTCAAACCATTTGTTGTTGCTGATCCTGAAATTAAGGAAGAAGAACTTGAAGGTGTAGATTTTATTATTATTGCAAGCGATGGACTTTGGAATGTCATATCAAACGAGGAAGCTGTTGCATTGGTACAACACAACCAAGATGCAGAAATGGCATCAAGAAATCTTATACAAGAAGCTTTTGCTCGAGAACTGGAAAGGCACGAGAAGCTAGTGGGCGGTGGGGTGGGCGAAGCAAAGCAAAGCAAAGGCTCTTCGATCAGAAATGGCCCTATTTCTCTCTCTCTCTTACTTTTCCCCATTTTCTCTGCTCTCAACTTTCTACTCTCACTCCCAGTCTCGACGAAAATGGTGAACGATACTGAGTATTACGACATTCTCGGTGTTCGTCCTTCTGCTTCTGAGGAGGAGATTCGTAAGGCCTATTATCTTAAGGCGAAACAAGTCCATCCAGATAAGAATTTGAATGATCCTCAAGCAGCTGAAAGGTTTCAGGCAAGTATACTCTCTGGTTCATTATCTTCTTTACATTTTGCGGCGTTAGGTGAAGCTTATCAAGTGTTGAGTGATGCAGTCCAAAGAGATGCATATGATAGGAATGGGAAGCACAGTGTTACTAGGTTAGATCTCTTGGTAGAGACTTATCAAGCTTACCAAGCTGATGTCATTCTTTTGGAATCCATGCTTGACCCTACTGCTGTTTTTGCACTTCTATTTGGAAGTGAATTATTTGAGGACTACATTGGGCATTTAGCTGTAGCATCAATGGCCTCATCTGAATTAGAAAGCGAAACTGGCAATCCAGAGAGATTACATGATAAGTTGAAGGCAAGTATGCAGCCTTATGGTAGAGGCAGATCAAACTATAGATCCTTAGAATTAATGGCCGTCCAGAAAGAAAGAGAAGAAAAACTTGCACGTATACTTGAGGGTTTTCTTAATCAATATGTACAAGGTGACAGAGACGGATTCTTACGGCATGCTGAATCTGAAGCCAAAAGACTTTCTAATGCGGCTTTTGGTATAAATATATTGCACACTATAGGCTACATTTATTCAAGACAAGCAGCACAAGAGCTTGGAAAGAGAGCCATTTACCTCGGTGTGCCATTTGTGGCCGAATGGTTTCGCAACAAGGGACATTTTTGGAAGTCACAGATAACAGCGGCAAAAGGCATGAAGATCTCAAGCTTACACTTTTTCTCCTCATCGATGATTGAGTATTCTGCTTTGATATCTTGCTACTTAATCGTACAAACTATTTATATGTATCCAGGTGCTTTTCAGTTGTTACAACTTCAAGATGATATTTGCCGGCAGTTTACAATGGATGGTAGTGGCCCTGGAAATGATATTGAATCGCATATTCAAGCGAATAAAGACACATTTCTCAGTTCTTTGTGGAAGCTTAATGTGGTTGACATAGAACTGACACTTATAAATGTGTGCCAGATGTTATTAGGCACAGATAATGAATGTTTTGTGGTCCAATCTGTTCTCCAGGTGCTACGCGATAATACTGTTAGAAAGGAAGAACTAAAAGCTCGTGCCCTGGCTCTGAAAATTCTTGGAAAGATATTCCAGGAGAAGCAAGCACAAAATGGTGGAACGTCAAGAAAGAAAGGTGCTGCTGCAGTAGATGACGATGGAACGAGTTCAGAGAGCAGCGATGATGAGGATGATCCCCGAAGACCGCTATCATATCGAACTCCTTTTCTTACTCAGGCAAGTAGATCAACTCTTCTCTTTCCACTCAAAAGGTGGATACTTTATCTCATGTATGGTATAGGTAGACTCTTCAGATGCCTGTGTAACCCAGCATTTGATGTGGACGATGATGAAATTGTGTATAAAAGCAAA 2394 41.98 MSSRDSNVLFSGGGISFLNENHTGKFSYGYSSFKGKRASMEDFYETRISEVDGQMVAFFGVFDGRTNGASTRKITYSAVEVFKQTDADYINEEKGQQKDAGSTASTAVLFGDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERQRIEQAGGFILWAGTWRVGGILAVSRAFGDKLLKPFVVADPEIKEEELEGVDFIIIASDGLWNVISNEEAVALVQHNQDAEMASRNLIQEAFARELERHEKLVGGGVGEAKQSKGSSIRNGPISLSLLLFPIFSALNFLLSLPVSTKMVNDTEYYDILGVRPSASEEEIRKAYYLKAKQVHPDKNLNDPQAAERFQASILSGSLSSLHFAALGEAYQVLSDAVQRDAYDRNGKHSVTRLDLLVETYQAYQADVILLESMLDPTAVFALLFGSELFEDYIGHLAVASMASSELESETGNPERLHDKLKASMQPYGRGRSNYRSLELMAVQKEREEKLARILEGFLNQYVQGDRDGFLRHAESEAKRLSNAAFGINILHTIGYIYSRQAAQELGKRAIYLGVPFVAEWFRNKGHFWKSQITAAKGMKISSLHFFSSSMIEYSALISCYLIVQTIYMYPGAFQLLQLQDDICRQFTMDGSGPGNDIESHIQANKDTFLSSLWKLNVVDIELTLINVCQMLLGTDNECFVVQSVLQVLRDNTVRKEELKARALALKILGKIFQEKQAQNGGTSRKKGAAAVDDDGTSSESSDDEDDPRRPLSYRTPFLTQASRSTLLFPLKRWILYLMYGIGRLFRCLCNPAFDVDDDEIVYKSK 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13025417 13036371 - Lsi08G005110.1 Lsi08g00511 668437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00511 798 Pfam DnaJ domain 300 376 IPR001623 -
Lsi08g00511 798 ProSiteProfiles PPM-type phosphatase domain profile. 27 254 IPR001932 -
Lsi08g00511 798 SMART dnaj_3 299 371 IPR001623 -
Lsi08g00511 798 SUPERFAMILY Chaperone J-domain 294 382 IPR036869 -
Lsi08g00511 798 Pfam X-domain of DnaJ-containing 476 668 IPR026894 -
Lsi08g00511 798 MobiDBLite consensus disorder prediction 712 746 - -
Lsi08g00511 798 Pfam Protein phosphatase 2C 82 242 IPR001932 -
Lsi08g00511 798 ProSitePatterns Nt-dnaJ domain signature. 356 375 IPR018253 -
Lsi08g00511 798 Gene3D - 18 248 IPR036457 -
Lsi08g00511 798 SUPERFAMILY PP2C-like 24 241 IPR036457 -
Lsi08g00511 798 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 604 763 - -
Lsi08g00511 798 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 295 570 - -
Lsi08g00511 798 CDD DnaJ 300 368 IPR001623 -
Lsi08g00511 798 CDD PP2Cc 26 241 IPR001932 -
Lsi08g00511 798 ProSiteProfiles dnaJ domain profile. 300 379 IPR001623 -
Lsi08g00511 798 Gene3D DnaJ domain 291 394 IPR036869 -
Lsi08g00511 798 PRINTS DnaJ domain signature 351 371 IPR001623 -
Lsi08g00511 798 PRINTS DnaJ domain signature 302 320 IPR001623 -
Lsi08g00511 798 PRINTS DnaJ domain signature 320 335 IPR001623 -
Lsi08g00511 798 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 604 763 - -
Lsi08g00511 798 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 295 570 - -
Lsi08g00511 798 SMART PP2C_4 17 275 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02441 Lsi-Chr4:31484866 Lsi08g00511 Lsi-Chr8:13025417 1.53E-24 dispersed
Lsi04g02442 Lsi-Chr4:31500149 Lsi08g00511 Lsi-Chr8:13025417 5.44E-14 dispersed
Lsi05g00082 Lsi-Chr5:1550775 Lsi08g00511 Lsi-Chr8:13025417 1.57E-73 dispersed
Lsi08g00511 Lsi-Chr8:13025417 Lsi10g00394 Lsi-Chr10:6009478 4.12E-84 dispersed
Lsi08g00511 Lsi-Chr8:13025417 Lsi02g01331 Lsi-Chr2:17811663 9.14E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00511 - - jre:108981366 838.565