Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00514 ATGGCACTCGATAACTGTATACAACTGAGCACCGCCGCCGCCATGTGCGCCACCACTTCCAGACCCAAATCTCCCTTTTTCTCTTCAAATTACCCCCAAAAGACATCCTTCACTGCCGTCTCCCTTCACCGTCTTAACAAATTACCCACTTCCGGACTCAGATTCTCCTCCCCTTCTTCCTCCACTTTCAAAAAATCCTTCTCCATCACGTGTCAAGCTCGTGGAGCCGTTGACGACGTGAAAGAAGTGACAGAGTCGAGTTGGAACAATTTGGTGGTTGAGAATCAAAAGGCTGTGCTGGTGGAATTTTGGGCGCCATGGTGTGGACCTTGTAAGATTATTGAGCCTGTGATTAAGGAATTAGCTCAGGAATATGCAGGGAAGATTGTTTGTTTGAAGCTTAATACGGATATTAGTCCAAATGTGGCCTCTAAATATGGGATTAGAAGCATTCCAACGGTTCTGTTTTTCAAGAATGGAGAGAAGAGAGAAAGTGTTATTGGGGCTGTGCCTAAATCTACTTTGGCTGCCACCATTGATAAGTATGTCGAGGTTTGA 558 45.52 MALDNCIQLSTAAAMCATTSRPKSPFFSSNYPQKTSFTAVSLHRLNKLPTSGLRFSSPSSSTFKKSFSITCQARGAVDDVKEVTESSWNNLVVENQKAVLVEFWAPWCGPCKIIEPVIKELAQEYAGKIVCLKLNTDISPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPKSTLAATIDKYVEV 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13066182 13067163 + Lsi08G005140.1 Lsi08g00514 668440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00514 185 ProSitePatterns Thioredoxin family active site. 100 118 IPR017937 -
Lsi08g00514 185 SUPERFAMILY Thioredoxin-like 70 183 IPR036249 -
Lsi08g00514 185 PANTHER GEO12009P1 28 182 - -
Lsi08g00514 185 Gene3D Glutaredoxin 79 184 - -
Lsi08g00514 185 PANTHER THIOREDOXIN M-TYPE PROTEIN 28 182 - -
Lsi08g00514 185 Pfam Thioredoxin 80 181 IPR013766 -
Lsi08g00514 185 PRINTS Thioredoxin family signature 147 158 - -
Lsi08g00514 185 PRINTS Thioredoxin family signature 107 116 - -
Lsi08g00514 185 PRINTS Thioredoxin family signature 99 107 - -
Lsi08g00514 185 ProSiteProfiles Thioredoxin domain profile. 58 184 IPR013766 -
Lsi08g00514 185 TIGRFAM thioredoxin: thioredoxin 84 182 IPR005746 GO:0015035
Lsi08g00514 185 CDD TRX_family 92 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00514 K03671 trxA; thioredoxin 1 - csv:101218257 303.138
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00715 Lsi-Chr5:9693130 Lsi08g00514 Lsi-Chr8:13066182 1.46E-44 dispersed
Lsi07g00506 Lsi-Chr7:5314166 Lsi08g00514 Lsi-Chr8:13066182 3.11E-06 dispersed
Lsi08g00514 Lsi-Chr8:13066182 Lsi08g01362 Lsi-Chr8:21923162 1.83E-16 dispersed
Lsi08g00514 Lsi-Chr8:13066182 Lsi01g00634 Lsi-Chr1:5114537 3.68E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1199 Blo01g01324 Blo12g01109 . Bda03g00029 . Bpe04g00019 . . Cmo04g02534 Cmo15g00640 . . . . Sed11g1319 . Cpe13g00660 Bhi04g01828 Tan11g1203 Cmetu01g1872 . Hepe02g2753 . Lcy10g1305 Cla08g00654 Cam08g1084 Cec08g0670 Cco08g0779 Clacu08g0788 . Cre08g0593 . . Cone17ag0803 Cone20ag0407 . . . Cme03g00422 . . . . . . . . . . . . . Car04g02331 Car15g00581 Cpe01g02094 . . . . . . . . . . . . . . . Lsi08g00514 . Chy03g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008381 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00514 Lsi_Chr08 FPKM 10.575758 13.066483 25.242163 28.907934 10.714136 9.323599 11.631299 31.104595 28.607786 33.645317