Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00515 ATGGTAACATCGGGGCCACCCACTCCTATGGGTGGTGGTGCGCAGTCTGTTTCACCCTCACTTCTACGATCTAATTCTGGATTGCTGGGGGTTCAAGGTGGTCTGCTTCCTTCTCAGGCAGCCTTTTCTTCACTTGTATCGCCCCGCAATCAGTTTAATAATATGAATATGCTTGGTAATATGTCCAACGTGTCATCTCTCCTTAATCAGTCATTTGGTAATGGGCCTCCTAATGCACATCCTGGTGCGGAGCCAGACCCTCTTTCTGGTGTTGGCAATGGAATGAGCTTTAATAATCCTTCATCATCATTTGTAGCATCCAATATGTCAAACCCCGTTTCATCCGTCCAAGGGCAGAATCCACAATTTTCGAACCTTTCTAACAGCCAGTTGCTATCAGATCAGCAGCAGTCGCAACAGCTAGATCCGCAGAACTTCCAACATAGTCAACAGTCGATGGAACAGGTTTCTGCACTTCAGAGCAATCAACAACCACAATTTCAAGCAATTCGAGGGTTGACTAGTGTTGGACCTGTAAAGTTGGAGCCTCAAGTGACCAGCAATGATCAACATGGACAGCAGCAGCAGCAGCAGCATTTGCAAACTTTGAGAAACCTTGGTCCAGTGAAATTGGAATCACAACGACTTCAGTCAATGAGAGGTTTGGCACCAGTAAAAATGGAACCCCAACAATCGGACCAGTCATTATTTCAGCAGCAGCAGCAGCAGCAGCAGCAACAACATCAACATCAACATCAGCATCAGCATCCACATCAACAACAACAGCAATCTCAACAATTTCTCCATATGTCTAGACAGTCCTCTCAGGCAGCAGCTGCCCAAATTAATTTAATGCACCAACAAAGGATGTTGCAATTGCAACAACAACATCAGCAACATCTCCTAAAAAGTATGCCTCCTCAACGGCCACAATTGCAACAACATTACCAACAGCAGAACCTTTCTCTGAGGTCTCCTGTTAAACCAGGATATGAACCTGGAATGTGTGCTCGGCGTCTGACTCATTACATGTATCACCAGCAACACAGACCTGAAGACAACAACATAGATTTCTGGAGGAAATTTGTTAACGAGTATTTTGCACCTCATGCCAAAAAGAAATGGTGTGTTTCCATGTATGGAAGTGGACGACAAACAACAGGAGTTTTTCCTCAGGATGTATGGCATTGTGAAATATGCAACCGCAAGCCTGGGCGTGGCTTTGAAGCAACTGCTGAAGTTCTTCCCAGGCTTTTTAAGATCAAGTATGAAAGTGGTACTATGGAGGAACTACTTTATCTTGACATGCCTCGTGAATACCATAATGCATCTGGTCAGATCGTCTTGGATTATGCAAAAGCGATACAGGAAAGTGTTTTTGAGCAACTTCGTGTTGTCCGTGATGGCCAACTTCGAATTGTTTTTTCTCCAGACCTTAAGATATGTTCATGGGAATTCTGTGCTCGACGCCATGAAGAACTTATTCCTCGGAGATTATTGATACCTCAGGTTAGTCACCTTGGAGCAGCAGCTCAAAAGTACCAGTCTGCCATTCAAAACGCATCATCCAATTTATCAACTCCCGAATTGCAAAACAATTGTAACATGTTTGTGGCTTCAGCACGACAATTAGCTAAAGCCTTGGAAGTTCCGCTGGTAAATGACTTGGGATATACAAAGAGATATGTGCGTTGTCTTCAGATATCCGAAGTGGTTAATAGCATGAAGGACTTGATTGATTACAGCAAAGAAACAGGGATTGGGCCAATGGATAGTCTAGCCAAGTTTCCTCGGAGGACTAGTTCATCATCGGGGGTTACAACTCAAGCTCAAATTTCTGATGAGCAGCAACAACAGCAATCATCCATAGCCCAGCACTCGAATAACAACCAGAGTTCTGTCCAGGCTTCTGCAGTGCAGCAGCTTACAGCTAGCAATGGTGTCACCAGTGTAAATAACACCGCCAACCAACCTTCAACATCAAACTCAGCGAGCACCATTGTTGGTCTTCTTCACCAGAATTCTATGAACTCCAGACAGCAGAACTCTATGGCTAATGCTAGCAACTCATATGGGGGAAGTTCTGTTCAGATTCCATCTCCTGGCTCTTCCAGTACAATTCCACCTACACAACCGAACCCTTCTACATTCCAGCCACCGACTCCCTCATCATCTAACAATCTATCCCAACTATCACATGCAGCTGCAAAGAATGCCAATCAAATGAGTGCTGCTAATTCTCCGGCAAATATCTCTATGCAACAACCTGCCCTATCTGGAGATGCTGATCCTAGTGATACACAATCCTCCGTGCAAAAGATCTTACAAGAGATGATGATGAATAATCATATGAACGGGCCAAATAGTCTGGTTGGTGTCGGTTCAGTGGTCAATGATATGAAAAACGTGAATGGGGTCTTACCTACAAGTAGTACAGGTCTCAACAATGGGAATTGTATAGGGGGAAACGGAGCAACAAACGGTGGCTCAGGAATGGGAGGAGGTGGATATGGATCAATGGGGAGTGGGCTTGGGCAGCCTGCCATGGGTAATGGAATTAGAACTGCAATGGGAAATAACTCCATTATGAATAGACGATTAGGAATTGCAACGCTTGCACTGGAACAAAGCATGAATGGTCAACCGCAGGATTTGGGAAACCAGCTTCTTAGTGGACTAGGAGCTGTAAATGGCTTTAGTAGTCTCCCATTTGAATGGAAGCCATCCCCATGA 2733 44.71 MVTSGPPTPMGGGAQSVSPSLLRSNSGLLGVQGGLLPSQAAFSSLVSPRNQFNNMNMLGNMSNVSSLLNQSFGNGPPNAHPGAEPDPLSGVGNGMSFNNPSSSFVASNMSNPVSSVQGQNPQFSNLSNSQLLSDQQQSQQLDPQNFQHSQQSMEQVSALQSNQQPQFQAIRGLTSVGPVKLEPQVTSNDQHGQQQQQQHLQTLRNLGPVKLESQRLQSMRGLAPVKMEPQQSDQSLFQQQQQQQQQQHQHQHQHQHPHQQQQQSQQFLHMSRQSSQAAAAQINLMHQQRMLQLQQQHQQHLLKSMPPQRPQLQQHYQQQNLSLRSPVKPGYEPGMCARRLTHYMYHQQHRPEDNNIDFWRKFVNEYFAPHAKKKWCVSMYGSGRQTTGVFPQDVWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTMEELLYLDMPREYHNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSHLGAAAQKYQSAIQNASSNLSTPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSKETGIGPMDSLAKFPRRTSSSSGVTTQAQISDEQQQQQSSIAQHSNNNQSSVQASAVQQLTASNGVTSVNNTANQPSTSNSASTIVGLLHQNSMNSRQQNSMANASNSYGGSSVQIPSPGSSSTIPPTQPNPSTFQPPTPSSSNNLSQLSHAAAKNANQMSAANSPANISMQQPALSGDADPSDTQSSVQKILQEMMMNNHMNGPNSLVGVGSVVNDMKNVNGVLPTSSTGLNNGNCIGGNGATNGGSGMGGGGYGSMGSGLGQPAMGNGIRTAMGNNSIMNRRLGIATLALEQSMNGQPQDLGNQLLSGLGAVNGFSSLPFEWKPSP 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13068820 13077822 - Lsi08G005150.1 Lsi08g00515 668441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00515 910 PANTHER EXPRESSED PROTEIN 1 253 - -
Lsi08g00515 910 MobiDBLite consensus disorder prediction 228 278 - -
Lsi08g00515 910 MobiDBLite consensus disorder prediction 678 728 - -
Lsi08g00515 910 PANTHER LIM DOMAIN-BINDING PROTEIN 1 253 IPR029005 -
Lsi08g00515 910 MobiDBLite consensus disorder prediction 705 719 - -
Lsi08g00515 910 Pfam LIM-domain binding protein 339 593 IPR029005 -
Lsi08g00515 910 PANTHER LIM DOMAIN-BINDING PROTEIN 256 909 IPR029005 -
Lsi08g00515 910 MobiDBLite consensus disorder prediction 596 639 - -
Lsi08g00515 910 MobiDBLite consensus disorder prediction 68 164 - -
Lsi08g00515 910 MobiDBLite consensus disorder prediction 226 278 - -
Lsi08g00515 910 PANTHER EXPRESSED PROTEIN 256 909 - -
Lsi08g00515 910 MobiDBLite consensus disorder prediction 589 639 - -
Lsi08g00515 910 MobiDBLite consensus disorder prediction 678 704 - -
Lsi08g00515 910 MobiDBLite consensus disorder prediction 92 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00273 Lsi-Chr8:6897463 Lsi08g00515 Lsi-Chr8:13068820 0 dispersed
Lsi08g00515 Lsi-Chr8:13068820 Lsi09g00593 Lsi-Chr9:6389304 8.51E-113 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00515 - - csv:101218018 1394.41