Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00519 ATGTCGTTGAGCTTCCGAATTTCGAATTCAGAGATGCCTCGTCGCAGGGACGACGATGACGACGACATTGATGCTGATGAGGAAGAGTATGAGGAAGAGATGGAACAACCTCTGGACGACGAGGAGGAGGAGGAGGAGGAAGATCGTTCGAGTAGGAAGCGGCGGAGATCGGATTTTATAGACGACGCTGCGGAGGAGGACGAGGACGAAGAGGAAGAAGAAGAGGAGGAGGAGGAGGATGATGATTTTGGTGGCGGTGGTCGGAGGCGGCGTGCCAAGAGGCCTAGCGGTTCTCAGTTTTTAGATATTGAGGCTGAGGTCGATAGCGATGACGATGAAGAGGAGGATGATGCAGAGGACGATTTCATAGTTGATAATGTAGCTGATATACCCGATGAAGATGATAATAGAAGGATGCATCGCCGCCCATTGCTACCACGGGAGGATGAACAAGAGGATGTTGAAGCACTTGAAAGAAGGATTCAAGCGAGATATGCAAGGTCAAATCATATGGAATATGACGAGGAGACGACGGAAGTGGAGCAGCAAGCCCTTTTACCTTCTGTAAGGGATCCAAAATTGTGGATGGTTAAATGTGCGTTTCTTCTTAAGATTTTTCCCTTTTGGAGTACCCATCGTAGAGAACAGTTGTACTTGATTAATATTGGCCGTGAACGGGAGGCTGCTGTTTGTCTAATGCAAAAATGCATTGATAGAGGGCCTGAAATGCAAATAAGATCTGCGGTTGCTCTTGACCATTTGAAGAACTTTATATATATTGAAGCCGACAAAGAAGCTCATGTTAGAGAGGCTTGTAAAGGTCTACGCAACATATATGCTCAAAAAATAACGCTTGTTCCAATTAAAGAGATGACTGATGTTCTCTCTGTTGAAAGCAAAGCAATTGATCTTTCTAGAGATACATGGGTTAGGATGAAGATTGGGACATATAAGGGGGATCTTGCCAAGGTGGTGGATGTTGATAATGTGCGGCAGAGGGTTACTGTGAAACTGATTCCACGGATAGACCTACAGTCTCTTGCAAATAAATTGGAAGGGAGAGAAGTTGCTAAGAAGAAGGCATTTGTTCCTCCACCTCGTTTTATGAATATTGATGAAGCTAGTAACTTACCCTTCTTCATATTCAGAGAGTTGCATATCCGTGTAGAGCGCAGACGTGATCCCATTACTGGAGAATACTTTGAGAACATTGGTGGCATGTTTTTCAAGGATGGTTTCTTGTATAAAACAGTGTCCATGAAGTCAATAAGTGCCCAAAACATAAAGCCAACTTTTGATGAACTTGAAAAATTTCGAAAGCCTGGAGAAAATGGAGATGGGGATATTGCTAGTTTGTCTACCTTGTTTGCAAACCGAAAGAAAGGGCACTTTATGAAGGGTGATGCTGTCATTGTTGTTAAGGGGGATCTCAAGAATTTGAAAGGATGGGTTGAGAAAGTAGAGGAAGAGAATGTCCACATCAGACCAGAAATGAAGGGCCTTCCTAAAACTCTTGCTGTGAATGAAAGAGAACTTTGCAAGTACTTTGAGCCTGGGAATCATGTAAAAGTTGTATCGGGCACTCAGGAGGGGGCTACTGGTATGGTTGTGAAGGTGGATCAGCATGTGCTTATTATACTATCCGATACAACCAAGGAACATATTCGGGTATTTGCTGATGATGTTGTTGAGAGCTCTGAGGTAACAACTGGTGTGACGAGAATTGGGGATTATGAACTTCATGATCTTGTGTTATTGGATAATATGAGCTTTGGTGTAATTATTCGTGTAGAAACTGAGGCTTTTCAGGTTCTTAAGGGTACTCCTGATAGGCCTGAGGTTGATATTGTGAAGTTGAGGGAAATAAAAAGTAAGATCGACAAGAAAATCAGCGTTCAAGATCGGTTCAATAACACAATTTCCTCCAAGGACGTAGTGAGGATTCTTGAAGGTCCTTGTAAGGGAAAACAAGGTCCGGTGGAGCACATATACAGAGGAATCCTGTTTATTTATGATCGCCATCACTTGGAACATGCAGGCTTTATATGTGCTAAATCACAGTCTTGTGTTGTTGTGGGTGGATCCCGAACTAATGGAAATAAAAATGGTAATTCATACTCTAGGTTTGCTGGCCTTGCGACCCCACCTCGTTTTCCTCAGTCACCTAAGAGGTTTCCCAGAGGAGGCCCCCCCAACGATGGTGGGGGAAGACATAGAGGTGGGAGAGGGCATCATGATGGGTTGGTTGGATCAACAGTAAAAGTTCGGCAGGGGCCTTATAAGGGTTACCGTGGGCGTGTTGTTGAAATAAAAGGCCAACTGGTTCGAGTGGAGCTTGAATCTCAAATGAAAGTTGTCACAGGCATTTTTTTAAAGGATATCTGGGAAATGTTAAGAAGTCTCAAATGGAAGTTAATTGACCGCACTTTTATCTCAGATAATGTTGCTGTTTCAACCCCCTATCGTGATGCATCTAGATATGGTATGGGAAGTGAAACTCCCATGCATCCTTCTCGAACTCCCCTGCATCCATACATGACCCCGATGAGAGATATTGGAACAACACCAATTCATGATGGCATGAGAACACCTATGAGAGATCGAGCATGGAATCCCTATGCACCCATGAGTCCGTCAAGGGAGAACTGGGAGGAAGGGAACCCTGCAACTTGGGGCGCTAGTCCGCAGTACCAGCCAGGAAGCCCTCCTTCACGAACATACGAAGCTCCAACTCCTGGTTCTGGTTGGGCAAACACTCCTGGTGGCAGTTACAGTGATGCTGGTACCCCCCGTGATAGTGGTTCAGCCTATGCAAATGCTCCGAGCCCATACTTGCCTTCAACTCCTGGTGGACAGCCCATGACACCAAATTCAGCCTCCTATCTTCCTGGCACTCCTGGCGGGCAACCAATGACACCAGGCACAGGTGGTCTGGATATGATGTCTCCTGTTATAGGTGGTGATACTGAAGGACCGTGGTACATGCCAGACATATTGGTCAATTACCGGAGGTCAGGAGATGATCCCATCATGGGAGTAATCCGGGAGGTGCTTCCGGATGGCTCGTGTAGGATAGGGCTTGGGTCAAGTGGAAATGGTGAAACGGTAACGGCACCTTCTAGCGAAGTAGAAGTGATTGTTCCAAGGAAGTCAGACAAGATCAAGATAATGGGTGGTGCATTACGTGGTGCCACTGGCAAGTTGATCGGTGTAGACGGCACTGATGGAATTGTGAAGGTAGATGACACTCTTGATGTTAAGATTTTGGATTTAGTTATTCTTGCAAAACTTGCCCAACCTTAA 3303 45.29 MSLSFRISNSEMPRRRDDDDDDIDADEEEYEEEMEQPLDDEEEEEEEDRSSRKRRRSDFIDDAAEEDEDEEEEEEEEEEDDDFGGGGRRRRAKRPSGSQFLDIEAEVDSDDDEEEDDAEDDFIVDNVADIPDEDDNRRMHRRPLLPREDEQEDVEALERRIQARYARSNHMEYDEETTEVEQQALLPSVRDPKLWMVKCAFLLKIFPFWSTHRREQLYLINIGREREAAVCLMQKCIDRGPEMQIRSAVALDHLKNFIYIEADKEAHVREACKGLRNIYAQKITLVPIKEMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQSLANKLEGREVAKKKAFVPPPRFMNIDEASNLPFFIFRELHIRVERRRDPITGEYFENIGGMFFKDGFLYKTVSMKSISAQNIKPTFDELEKFRKPGENGDGDIASLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNERELCKYFEPGNHVKVVSGTQEGATGMVVKVDQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTRIGDYELHDLVLLDNMSFGVIIRVETEAFQVLKGTPDRPEVDIVKLREIKSKIDKKISVQDRFNNTISSKDVVRILEGPCKGKQGPVEHIYRGILFIYDRHHLEHAGFICAKSQSCVVVGGSRTNGNKNGNSYSRFAGLATPPRFPQSPKRFPRGGPPNDGGGRHRGGRGHHDGLVGSTVKVRQGPYKGYRGRVVEIKGQLVRVELESQMKVVTGIFLKDIWEMLRSLKWKLIDRTFISDNVAVSTPYRDASRYGMGSETPMHPSRTPLHPYMTPMRDIGTTPIHDGMRTPMRDRAWNPYAPMSPSRENWEEGNPATWGASPQYQPGSPPSRTYEAPTPGSGWANTPGGSYSDAGTPRDSGSAYANAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVIGGDTEGPWYMPDILVNYRRSGDDPIMGVIREVLPDGSCRIGLGSSGNGETVTAPSSEVEVIVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQP 1100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13139030 13154918 + Lsi08G005190.1 Lsi08g00519 668445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00519 1100 MobiDBLite consensus disorder prediction 20 46 - -
Lsi08g00519 1100 CDD KOW_Spt5_1 307 344 IPR041973 -
Lsi08g00519 1100 CDD KOW_Spt5_4 643 685 IPR041977 -
Lsi08g00519 1100 PIRSF Spt5 210 1100 IPR017071 GO:0006357|GO:0032784
Lsi08g00519 1100 PIRSF Spt5 6 204 IPR017071 GO:0006357|GO:0032784
Lsi08g00519 1100 MobiDBLite consensus disorder prediction 104 123 - -
Lsi08g00519 1100 SMART kow_9 639 666 IPR005824 -
Lsi08g00519 1100 SMART kow_9 1047 1074 IPR005824 -
Lsi08g00519 1100 SMART kow_9 463 490 IPR005824 -
Lsi08g00519 1100 SMART kow_9 303 330 IPR005824 -
Lsi08g00519 1100 SMART kow_9 746 773 IPR005824 -
Lsi08g00519 1100 SMART kow_9 515 542 IPR005824 -
Lsi08g00519 1100 Gene3D - 731 788 IPR014722 -
Lsi08g00519 1100 Gene3D - 216 305 IPR036735 GO:0006355
Lsi08g00519 1100 MobiDBLite consensus disorder prediction 857 970 - -
Lsi08g00519 1100 Pfam Spt5 transcription elongation factor, acidic N-terminal 100 187 IPR022581 -
Lsi08g00519 1100 Coils Coil 27 47 - -
Lsi08g00519 1100 Pfam Early transcription elongation factor of RNA pol II, NGN section 221 295 IPR005100 -
Lsi08g00519 1100 MobiDBLite consensus disorder prediction 47 61 - -
Lsi08g00519 1100 Gene3D - 306 344 IPR014722 -
Lsi08g00519 1100 CDD NGN_Euk 193 296 IPR039385 -
Lsi08g00519 1100 SMART nusgn_4 214 298 IPR006645 GO:0140673
Lsi08g00519 1100 MobiDBLite consensus disorder prediction 889 942 - -
Lsi08g00519 1100 Gene3D - 518 567 IPR014722 -
Lsi08g00519 1100 PANTHER SUPPRESSOR OF TY 5 39 1098 IPR039659 GO:0006357|GO:0032784
Lsi08g00519 1100 SUPERFAMILY Translation proteins SH3-like domain 507 566 IPR008991 -
Lsi08g00519 1100 MobiDBLite consensus disorder prediction 712 750 - -
Lsi08g00519 1100 Coils Coil 147 167 - -
Lsi08g00519 1100 MobiDBLite consensus disorder prediction 951 965 - -
Lsi08g00519 1100 CDD KOW_Spt5_6 1041 1098 IPR041980 -
Lsi08g00519 1100 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 39 1098 - -
Lsi08g00519 1100 MobiDBLite consensus disorder prediction 62 82 - -
Lsi08g00519 1100 CDD KOW_Spt5_2 464 514 IPR041975 -
Lsi08g00519 1100 CDD KOW_Spt5_3 515 565 IPR041976 -
Lsi08g00519 1100 ProSitePatterns Ribosomal protein L24 signature. 467 484 IPR005825 GO:0003735|GO:0005840|GO:0006412
Lsi08g00519 1100 Coils Coil 60 81 - -
Lsi08g00519 1100 MobiDBLite consensus disorder prediction 1 123 - -
Lsi08g00519 1100 CDD KOW_Spt5_5 748 787 IPR041978 -
Lsi08g00519 1100 Gene3D - 458 515 IPR014722 -
Lsi08g00519 1100 Pfam KOW motif 749 779 IPR005824 -
Lsi08g00519 1100 Pfam KOW motif 518 545 IPR005824 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00519 K15172 SUPT5H, SPT5; transcription elongation factor SPT5 - csv:101204562 1840.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00519 Lsi-Chr8:13139030 Lsi08g00689 Lsi-Chr8:15191021 2.47E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1207 Blo01g01326 . Bda01g00691 . Bpe02g00614 . . Bma01g02111 Cmo04g02539 Cmo15g00634 . . . . Sed01g2883 . Cpe13g00663 Bhi04g01823 Tan11g1195 Cmetu03g0776 . Hepe02g2759 . Lcy10g1309 Cla08g00661 Cam08g1091 Cec08g0676 Cco08g0785 Clacu08g0796 . Cre08g0599 . . . . . . . Cme03g00404 . . . . . . . . . . . . . Car04g02336 Car15g00576 Cpe01g02098 . . . . . . . . . . . . . . . Lsi08g00519 . Chy03g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005509 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00519 Lsi_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.700642 0.947755 0.514306