Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00522 ATGAAGCTGTTTGGAGGGATGGAGCGTCGGAGAATTAGTCTTGGGTCTAAATGGTGGTGCCTTTTCGTTGTCCTATGGGTCGCCACCGACGGTTTCCCGGCCGAGGATCTTGTCGAGAGGCTCCCCGGCCAACCACCAGTCGGTTTCAGACAATTTGCAGGTTATGTCGATGTCGATGTCGATGCCGGTAGAAGTTTGTTTTACTACTTTGTTGAAGCTCAGCAAGATCCCCATCTCCTCCCCCTCACTCTATGGCTCAATGGAGGTCCAGGTTGCTCTTCAGTTGGCGGGGGTGCCTTTACAGAGTTGGGACCCTTTTATCCAAAAGGTGATGGTCGAGGCCTTCGAAGAAACTCCATGTCCTGGAATAAAGCCTCTAATCTACTGTTTGTGGAGTCTCCTGCTGGGGTAGGATGGTCATACTCAAACAGAACGTCTGACTACACTTGTGGCGATGACTCCACTGCCAGAGATATGCTCACCTTTATGTTGAAATGGTATGACAAATTTCCAGCTTTCAGAGATAGGTCATTTTTCCTCACAGGAGAAAGTTATGCAGGCCATTACATTCCTCAACTAGCTGATGCTATACTGGACTATAACATTCACTCAAAGGGCTTCAAGTTCAATATCAAGGGAGTTGCTATTGGAAATCCATTACTTAATCTAGACAGGGATGCACAAGCAACCTACGAATTCTTTTGGTCTCATGGAATGATTTCTGATGAAGTTTGGCTAGCAATCACCAGAGATTGTGATTTTGATGATTATGTATTGACAAATCCACACAATGTATCCACATCGTGCAACGAAGCCATCGCCGACGCCAACGGTATCGTTGGCGAGTACATAAATAACTATGATGTTCTTTTGGATGTCTGTTACCCTTCCATTGTCGAGCAAGAGCTTAGATTGAAGAAAATGGCAACTAAAATAAGCATGGGAGTTGATGTGTGCATGACTTATGAAAGGCGTTTCTATTTCAATTTACCAGAAGTTCAAAAGGCTCTTCATGCGAATCGTACTAATTTGCCTTATGAATGGTCCATGTGCAGTGACACATTAGACTACAATTACAATGATACAAACATCAACATGCTTCCCTTACTGAAGAGAATAGTCCAAAACCACATCCCACTTTGGATCTTCAGTGGAGATGAGGATTCAGTAGTGCCATTTCTGGGGTCTAGGACACTAGTCCGAGAGTTGGCTCATGACCTTAAATTCAAGGTCACAGTACCCTACGGAGCTTGGTTCCACAAGGGCCAGGTCGGCGGCTGGGCCATCGAGTACGGCAACTCACTGACATTCGCAACGGTTCGTGGAGCGTCTCATATGGTACCCTTCGCCCAACCCTCTAGAGCTCTGCATTTGTTCTCTTCATTTGTAAAAGGAAGGAGGCTGCCCAATTCTACTCGCCCTTCCATTGATGATTAA 1437 45.72 MKLFGGMERRRISLGSKWWCLFVVLWVATDGFPAEDLVERLPGQPPVGFRQFAGYVDVDVDAGRSLFYYFVEAQQDPHLLPLTLWLNGGPGCSSVGGGAFTELGPFYPKGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNRTSDYTCGDDSTARDMLTFMLKWYDKFPAFRDRSFFLTGESYAGHYIPQLADAILDYNIHSKGFKFNIKGVAIGNPLLNLDRDAQATYEFFWSHGMISDEVWLAITRDCDFDDYVLTNPHNVSTSCNEAIADANGIVGEYINNYDVLLDVCYPSIVEQELRLKKMATKISMGVDVCMTYERRFYFNLPEVQKALHANRTNLPYEWSMCSDTLDYNYNDTNINMLPLLKRIVQNHIPLWIFSGDEDSVVPFLGSRTLVRELAHDLKFKVTVPYGAWFHKGQVGGWAIEYGNSLTFATVRGASHMVPFAQPSRALHLFSSFVKGRRLPNSTRPSIDD 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13171853 13177093 - Lsi08G005220.1 Lsi08g00522 668448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00522 478 Pfam Serine carboxypeptidase 43 465 IPR001563 GO:0004185|GO:0006508
Lsi08g00522 478 ProSitePatterns Serine carboxypeptidases, serine active site. 180 187 IPR018202 GO:0004185
Lsi08g00522 478 Gene3D alpha/beta hydrolase 33 295 IPR029058 -
Lsi08g00522 478 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 27 472 IPR001563 GO:0004185|GO:0006508
Lsi08g00522 478 Gene3D - 366 465 - -
Lsi08g00522 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Lsi08g00522 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 435 448 IPR001563 GO:0004185|GO:0006508
Lsi08g00522 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Lsi08g00522 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Lsi08g00522 478 PANTHER CARBOXYPEPTIDASE 27 472 - -
Lsi08g00522 478 ProSitePatterns Serine carboxypeptidases, histidine active site. 435 452 IPR033124 GO:0004185
Lsi08g00522 478 Gene3D - 319 356 - -
Lsi08g00522 478 SUPERFAMILY alpha/beta-Hydrolases 39 468 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00522 K16297 SCPL-II; serine carboxypeptidase-like clade II [EC:3.4.16.-] - csv:101207193 927.546
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00993 Lsi-Chr7:13760532 Lsi08g00522 Lsi-Chr8:13171853 5.60E-98 dispersed
Lsi08g00522 Lsi-Chr8:13171853 Lsi11g00697 Lsi-Chr11:7367195 7.66E-117 dispersed
Lsi03g01660 Lsi-Chr3:27797999 Lsi08g00522 Lsi-Chr8:13171853 1.06E-44 transposed
Lsi06g01676 Lsi-Chr6:26974186 Lsi08g00522 Lsi-Chr8:13171853 3.67E-137 transposed
Lsi07g00380 Lsi-Chr7:4094659 Lsi08g00522 Lsi-Chr8:13171853 1.29E-111 transposed
Lsi10g01214 Lsi-Chr10:16411524 Lsi08g00522 Lsi-Chr8:13171853 1.04E-07 transposed
Lsi02g02001 Lsi-Chr2:25992220 Lsi08g00522 Lsi-Chr8:13171853 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1215 . . . . . . . . Cmo04g02540 Cmo15g00631 . Cma09g01090 . . Sed11g1328 Cpe06g00890 . Bhi04g01820 Tan11g1189 Cmetu01g2322 . Hepe02g2767 . Lcy10g1313 Cla08g00662 Cam08g1093 Cec08g0678 Cco08g0787 Clacu08g0798 . Cre08g0601 . Cone7ag1433 . Cone20ag0399 . . . Cme03g00398 . Blo18g00222 . . . . Bma01g00874 . . . Cmo09g01099 . . Car04g02338 Car09g00988 Cpe01g02099 . Bhi09g01511 . . . . Mch11g1423 . Cla09g00918 Cam09g0970 Cec09g0975 Cco09g0981 . . Cre09g0939 Lsi08g00522 . Chy03g00587 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002124 1 2 1 1 1 2 3 2 2 2 2 2 1 2 3 3 2 3 2 2 2 2 2 2 2 2 3 7 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00522 Lsi_Chr08 FPKM 3.447512 4.224137 4.891382 4.678092 3.242035 3.613338 3.024153 5.531432 5.06064 5.749755