Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00523 ATGTTCTTGATTACGGCTCGTAATTTCAGACTCTCTGCGGTTTCCACTTCAATAATCCTTCCACGGAGTGGCTTCCGATGGTCTTCAATCTCCCCCAGAAATCTTCCCTTCCCATTTGTCGAGCATCGATTTTCTTCTACGTCGAACAATCCCCTATTACTTCATGCCAGAAAGAGAGACTCAGAATCAGAGCCAGTTCTCAAACGAAACATCGTCGAGGAAGTGTCGCAGGACGAAGAAGATGACGTCCTTCTCGACGAACTTGAAGAAGACTGGTCTTGGAAAAGTAAATTGACGGGACACGTTCTTGATTGCATAGATGAGATAATGGAAGATGATGGCGAAGATTACTTTGAAGAAGAGTATATGGAGGATAATGCTGAAGTTTATGAAGGGGATGGCGGGGAAGGAGGTGGAATTTCCCTTGCTGGGACATGGTGGGATAAAGAAGCACTGGCCATAGCTGAGGAGGTTATTCTTTCATTTCACGGTGAATTGAAGATTTATGCTTTCAAAACAGTCTCGAATTCCACTGTTCGAGTGCGGATTGAAAAGCTTTCTAACAAATCGGGTTCCCCCAGTATGGAAGATATTGAGGCATTTTCTACATCATATCGAGCACGATTGGATGAGGCAGAGCTTGCTAAATCTGTGCCAGAGAACATATCTTTAGAGGTCTCATCTCCTGGTGTTGAACGGGTTGTTCGGATTCCTGACGAGCTGGATCGGTTCAAAGAGAGGACAATGTATGTGAAATACACAAACAATGTAGTTACAGCCAGTTCGTCCTCTGAGAATGATGGCATTTTCAAGCTTGTGTCATTCGACATAGAAGCAAAGTGCTGCACTTGGGGTTTAGCAGACGTGAAGATAAATCGAGAGAAGGCGGGAAAAGGAAGACCTCTAAGCAAAAAGCAAAGAGAGTGGCGTTTAGAAACTCCTTTTGATTCATTACGTTTGGTTAGGCTGTATTCTGATTGCTGA 984 44.0 MFLITARNFRLSAVSTSIILPRSGFRWSSISPRNLPFPFVEHRFSSTSNNPLLLHARKRDSESEPVLKRNIVEEVSQDEEDDVLLDELEEDWSWKSKLTGHVLDCIDEIMEDDGEDYFEEEYMEDNAEVYEGDGGEGGGISLAGTWWDKEALAIAEEVILSFHGELKIYAFKTVSNSTVRVRIEKLSNKSGSPSMEDIEAFSTSYRARLDEAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERTMYVKYTNNVVTASSSSENDGIFKLVSFDIEAKCCTWGLADVKINREKAGKGRPLSKKQREWRLETPFDSLRLVRLYSDC 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13180314 13183390 - Lsi08G005230.1 Lsi08g00523 668449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00523 327 PANTHER OSJNBA0006B20.18 PROTEIN 26 327 - -
Lsi08g00523 327 Gene3D - 149 229 IPR035956 -
Lsi08g00523 327 Pfam RimP N-terminal domain 171 232 IPR028989 -
Lsi08g00523 327 PANTHER OSJNBA0006B20.18 PROTEIN 26 327 - -
Lsi08g00523 327 SUPERFAMILY YhbC-like, N-terminal domain 170 232 IPR035956 -
Lsi08g00523 327 Hamap Ribosome maturation factor RimP [rimP]. 149 327 IPR003728 GO:0042274
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00523 - - - csv:101204078 486.493
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00358 Lsi-Chr4:3585339 Lsi08g00523 Lsi-Chr8:13180314 1.36E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1216 Blo01g01787 . . . . . . Bma01g02573 . Cmo15g00630 . . . . Sed03g0457 . Cpe13g00664 Bhi04g01819 Tan11g1188 Cmetu03g1258 . Hepe02g2768 . Lcy10g1314 Cla08g00663 Cam08g1094 Cec08g0679 Cco08g0788 Clacu08g0799 . Cre08g0602 . . . . . . . Cme03g00397 Blo17g00222 . . . . Bpe14g00329 . Bma02g00281 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00523 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013291 0 1 1 1 1 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00523 Lsi_Chr08 FPKM 9.27662 8.669052 12.92513 13.150044 10.31033 10.742789 12.083477 15.715188 14.939025 17.539665