Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00525 ATGGTGCTGATTTCGGTCGTTCGGGATTATATCAACAAGATGTTGCAGGACATCTCCGGCATGAAGGTTCTCATCCTCGATTCTCAGACGGTTAGTGTTGTCAGTGTGGTGTACTCGCAGTCGGAGCTTCTTCAAAAAGAAGTCTTTTTGGTTGAATTGGTAGATACTGTATCAAAATCAAGAGAATCCATGTATCATCTTAAAGCAGTTTGCTTTCTCAGGCCTAACTCGGAGAATATACAGCTTTTACGTCGCCAGCTGGCTAATCCTAGATTTGGGGAGTATCACCTTTTTTTCTCCAACATTTTGAAGGAAACTCAGATTCATATACTAGCTGATTCAGACGAGCAGGATGTCGTCCAGCAAGTTGTGGAGTTTTATGGGGATTTCATGGCCATTGATCCTTATCATTTCACTTTAAATATGCCATCAAACCATATATACATGATCCCAGCAGTTGTTGATCCTCCCAGTTTGCAACATTTCTGTGACCGAGTTGTAGATGGCATTGCAGCACTTTTCTTGGCCCTAAAACAAAGGCCCGTTATTCGGTACCAAAGGACTTCAGATGTTGCCAAGAGGATAGCACAGGAAGCATCACAAGAAAGTGGTCTGTTTGATTTTCGAAGAATGGAAGTTTCCCCTTTGTTACTGGTAATTGATAGGAGGGATGACCCACTGACTCCCCTGCTGAATCAATGGACTTATCAGGCAATGGTTCATGAATTGCTAGGTATTCAAGATAATAAAGTGGACTTGAAAAGCATTGCGAAATCTTCAAAGGATCAACAGGAGGTTGTGCTATCATCAGAGCAGGATTCGTTTTATAAAGCTAACATGTACGAGAATTTTGGAGATATTGGAATGAATATAAAGAAGTTGGTGGATGATTTTCAGCAAATTGCCAAAAGTAACCAGAACATACAGACAATAGAGGACATGGCAAAGTTTGTTGACAATTATCCAGAATACAGAAAAATGCACGGTAATGTTTCAAAACATGTGACGTTGGTGACAGAGATGAGTAAAATAGTTGAGGAGCGAAAGCTTATGTTAGTTTCACAGACAGAACAGGAATTGGCTTGCAATGGTGGGCAAGTGGCTGCTTTTGAGGCTGTAACAAATCTTTTGAACAATGAGAGTATTTCTGATATAGACCGTCTGCGGCTAGTTATGTTGTATGCCTTACGGTATGAGAAGGAGAGCCCTGTCCAACTGATGCAGCTTTTCAACAAATTGGCTTCTCGTTCTGCCAAATATAAAACAGGGCTTGTCCAGTTTCTTTTAAAACAAGCTGGTGTTGATAAACGAACGGGTGATCTTTATGGAAATCGAGATCTTTTGAATATTGCTCGTAACATGGCTCGTGGATTAAAGGGGGTTGAGAACGTATACACTCAGCATCAACCTCTTGTGGTCCAGACCATGGAAAGTATAATCAAGGGACGATTGAGAGATGTGGACTACCCGTTTGTTGGGAATCACTTTCAGCAAGCAAGGCCACAAGAAGTCATCATTTTCATTGTAGGTGGGACAACATATGAGGAGTCACGTGCTGTAGCTTTACAAAACGCAACTACTTCTGGAATACGTTTTATCCTGGGTGGTTCTGTTGTTCTAAATTCGGGAAGATTTATGTCTATTTATGATATGAATCCTATTGCTACAATTAGTAACTGTTCCTATCTGATGAGGCGGTTGCAAGGGTTTTTGAAGGACTTGGAAGAAGCTCAGCGGATATCTCGTTCGAGCGCCACGGTGATTTGA 1767 41.37 MVLISVVRDYINKMLQDISGMKVLILDSQTVSVVSVVYSQSELLQKEVFLVELVDTVSKSRESMYHLKAVCFLRPNSENIQLLRRQLANPRFGEYHLFFSNILKETQIHILADSDEQDVVQQVVEFYGDFMAIDPYHFTLNMPSNHIYMIPAVVDPPSLQHFCDRVVDGIAALFLALKQRPVIRYQRTSDVAKRIAQEASQESGLFDFRRMEVSPLLLVIDRRDDPLTPLLNQWTYQAMVHELLGIQDNKVDLKSIAKSSKDQQEVVLSSEQDSFYKANMYENFGDIGMNIKKLVDDFQQIAKSNQNIQTIEDMAKFVDNYPEYRKMHGNVSKHVTLVTEMSKIVEERKLMLVSQTEQELACNGGQVAAFEAVTNLLNNESISDIDRLRLVMLYALRYEKESPVQLMQLFNKLASRSAKYKTGLVQFLLKQAGVDKRTGDLYGNRDLLNIARNMARGLKGVENVYTQHQPLVVQTMESIIKGRLRDVDYPFVGNHFQQARPQEVIIFIVGGTTYEESRAVALQNATTSGIRFILGGSVVLNSGRFMSIYDMNPIATISNCSYLMRRLQGFLKDLEEAQRISRSSATVI 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13193757 13200870 + Lsi08G005250.1 Lsi08g00525 668451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00525 588 Pfam Sec1 family 22 546 IPR001619 GO:0016192
Lsi08g00525 588 PIRSF VPS45_Sec1 1 554 IPR001619 GO:0016192
Lsi08g00525 588 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 233 346 IPR043127 -
Lsi08g00525 588 Gene3D - 138 547 IPR027482 -
Lsi08g00525 588 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 3 546 IPR001619 GO:0016192
Lsi08g00525 588 SUPERFAMILY Sec1/munc18-like (SM) proteins 3 547 IPR036045 -
Lsi08g00525 588 Gene3D - 348 469 - -
Lsi08g00525 588 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 45 3 546 - -
Lsi08g00525 588 Gene3D - 3 128 IPR043154 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00525 K12479 VPS45; vacuolar protein sorting-associated protein 45 - csv:101203589 1031.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00089 Lsi-Chr4:1044128 Lsi08g00525 Lsi-Chr8:13193757 2.81E-06 dispersed
Lsi08g00525 Lsi-Chr8:13193757 Lsi11g01277 Lsi-Chr11:21379513 1.64E-14 dispersed
Lsi08g00525 Lsi-Chr8:13193757 Lsi09g01897 Lsi-Chr9:27799365 1.50E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1219 . . . . . . . . Cmo04g02542 Cmo15g00629 . . . . Sed01g3642 . Cpe13g00665 Bhi04g01816 Tan11g1186 Cmetu03g0425 . Hepe02g2770 . Lcy10g1316 . . . . . . . . . Cone17ag0798 Cone20ag0397 . . . Cme03g00395 Blo17g00221 . . Bda13g01531 . Bpe14g00330 . Bma02g00280 . . . . . Car04g02340 Car15g00571 Cpe01g02102 . . . . . . . . . . . . . . . Lsi08g00525 . Chy03g00589 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007852 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00525 Lsi_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.018722 0.0 0.0 0.165872 0.0