Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00526 ATGGGATGGAGGGTGTTCCTCTACATACTGTTTATTCTCTTCAATATGGTTGAATCCTCCAGTAGATCAGGGAAGATGTGGTTACTGAATTTAAGCAGTGAAGCAGCACCCAACTTCAGCTGGACAATTCTCAGTGCTGGTGTATTCGTCCTTGTTGCACTTGTTCTTTCCACGTTTCTCATCATTGAACATTTAGCTTCTTATAATCAACCAGAGGAACAGAAGTTTTTGATTGGTCTGATATTGATGGTTCCTGTTTACTCTCTAGAATCGTTCCTGTCATTGTTGAATTCAAATGGTGCATTCAACTGTGAAGTGATACGGGACTGCTATGAGGCATTTGCATTATATTGCTTTGAAAGATACCTTATTGCTTGCTTGGGTGGTGAGAAACGTACGCTTGAGTTCATGGAAAGTCAGACTGTTATGGACTCTAGCACACCTCTTTTGGCGGAAAAATATGCATATGGGGTTGTAGAACATCCTTTTCCCTTAAATTGCTTCATAAGGGATTGGTATCTTGGTTCTGACTTCTATCATGCGGTGAAAATTGGTATTGTTCAATATATGATATTGAAGATGATATGTGCGCTCCTAGCAATGATTCTTGAAAGTTTCGGGGTCTATGGAGAGGGAAAGTTCGAGTGGAGATATGGTCAATCGTGGGCCCTATATTGCCTTCTCCAATTCTATTCTGTCACGAAGGACAAATTGGAACCAATTAAACCATTGGCAAAGTTTCTTGTGGTCAAGTCAATCGTTTTCCTCACTTGGTGGCAAGGTGTTGCCGTTGCCTTTCTTTTCTCGATAGGAGCTTTCAAAGGGTCCTTGGCTCGGGAGCTAAAGACACGCATACAAGATTACTTGATATGTATTGAGATGGGTATTGCTGCCGTCGCACATGTTTACACCTTTCCAGCAGTACCTTATAAACGTGGAGAAAGATGTGTTCGTAATGTTGCGGTGCTGTCTGACTACGCATCCCTGGGAACACCACCTGATCCAGAGGAGGTTAGAGACTCTGAACGAACAACTAAAATAAGCTTGGGTCGCCAAGATGAGAGAGAGAAGCGTTTGAATTTTCCGCAGAGTGTTCGAGATGTTGTCATTGGAAGCGGTGAAATTATTGTTGATGACATGAAGTATACAGTCACACACGTAGTAGAACCGGTTGAAAGGGGGATTGCAAAACTTAACAAAACGATCCATCGGTTCTCTGAAAATGTTAAACGGCATGAAGAGCAACGGAAGAGTGCCAAGGATGATAGCCATCTGATTCCTTTGAACTCCTGGTCAAAAGAATTTTCTGAACTTGAAGAAAATCTTACTCTAGGCAGCGTAAGTGACAGTGGAATCTCCAATGGTAAGAGACAACATTCCCAATCAAAAGCCTCCACTTCTCGAATTAGAATTGGCAGATAA 1422 42.05 MGWRVFLYILFILFNMVESSSRSGKMWLLNLSSEAAPNFSWTILSAGVFVLVALVLSTFLIIEHLASYNQPEEQKFLIGLILMVPVYSLESFLSLLNSNGAFNCEVIRDCYEAFALYCFERYLIACLGGEKRTLEFMESQTVMDSSTPLLAEKYAYGVVEHPFPLNCFIRDWYLGSDFYHAVKIGIVQYMILKMICALLAMILESFGVYGEGKFEWRYGQSWALYCLLQFYSVTKDKLEPIKPLAKFLVVKSIVFLTWWQGVAVAFLFSIGAFKGSLARELKTRIQDYLICIEMGIAAVAHVYTFPAVPYKRGERCVRNVAVLSDYASLGTPPDPEEVRDSERTTKISLGRQDEREKRLNFPQSVRDVVIGSGEIIVDDMKYTVTHVVEPVERGIAKLNKTIHRFSENVKRHEEQRKSAKDDSHLIPLNSWSKEFSELEENLTLGSVSDSGISNGKRQHSQSKASTSRIRIGR 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13203288 13210184 + Lsi08G005260.1 Lsi08g00526 668452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00526 473 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 13 464 IPR005178 -
Lsi08g00526 473 PANTHER ORGANIC SOLUTE TRANSPORTER SUBUNIT ALPHA-RELATED 13 464 - -
Lsi08g00526 473 Pfam Organic solute transporter Ostalpha 43 310 IPR005178 -
Lsi08g00526 473 Coils Coil 395 422 - -
Lsi08g00526 473 MobiDBLite consensus disorder prediction 446 473 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00526 - - - csv:101203343 893.649
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01284 Lsi-Chr4:20264860 Lsi08g00526 Lsi-Chr8:13203288 5.96E-22 dispersed
Lsi08g00526 Lsi-Chr8:13203288 Lsi11g01278 Lsi-Chr11:21390931 1.13E-144 dispersed
Lsi08g00526 Lsi-Chr8:13203288 Lsi02g00708 Lsi-Chr2:6341711 3.68E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1222 . . . . . . . . Cmo04g02543 Cmo15g00626 . . . . . Cpe06g00929 . Bhi04g01815 Tan11g1185 . . . . . Cla08g00665 Cam08g1096 Cec08g0681 Cco08g0790 Clacu08g0802 . Cre08g0606 . . Cone17ag0797 Cone20ag0396 . . . Cme03g00394 . Blo18g00220 . Bda13g01530 Bpe02g01601 Bpe14g00331 Bma01g00869 . . . . . . Car04g02341 Car15g00570 . . . . . . . . . . . . . . . . Lsi08g00526 . Chy03g00590 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005100 4 4 1 1 2 1 2 0 1 1 0 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 2 3 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00526 Lsi_Chr08 FPKM 3.933371 5.153958 3.730904 3.890129 6.022264 7.541557 6.453043 8.726116 9.317103 8.204405