Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00528 ATGAAGAGGAAGAGAGAAGTGGAAAAGGAATCTGAAATGAGGTCTGCAACAGCAGAGCTTTCAGTGTTGGCTAAGTTCAAACCTGTTGATCATGCTGCTTCTGACATACCCACCAATCAATTTCTTTCTATTTGCAATTTGATCCTTCAATTTCTTGATAAGGTAGGGCCAACAATGACTGTTCTAAGACAAGACATTTATCAGAACATTCAGAGGTTGGAGACCATGTATGAGTCTGATCCTTCCATGTATTCCAATATGGTAGAAATTCTGAAGAAAGAGACAAATGAAGGAAATGCAAGGAAGCTCACCAGCTGTAGCAGAGCCTTTCTATGGCTGACAAGGTCACTGGATTTTACAGTGTCCTTATTACAAAAGTCAAAAGAAGAACCTAGAGTGAAAATGGAGCAAGCAGTAGAGGATGCTTACAACCTTACTCTAAAGCCATGGCATGGATGGATTTCATCTGCTGCTTACAAAATAGCTCTGAAGCTTGTGCCAGATAGTGAAACCTTTGCTAATCTCCTAATGGCGAAAGACGAAAAACACGAAACCCTTGTGGAGGAAATAGACTCCTTCATTTCCCAGCTCTCGCCTTTCCTAGAAGATATCCATAATATTCTGGTAAACACAAGTATTACTTTCAGCATTAGAATCAATTCAATGACAGTTTACCTACTGAGCAAGTTCATGTTTTTGTTTTCCTCAGAGACTGTACAGGTTAGATCGCTTAAAGTCTGCATAAAGAAAGACCAATGA 759 39.66 MKRKREVEKESEMRSATAELSVLAKFKPVDHAASDIPTNQFLSICNLILQFLDKVGPTMTVLRQDIYQNIQRLETMYESDPSMYSNMVEILKKETNEGNARKLTSCSRAFLWLTRSLDFTVSLLQKSKEEPRVKMEQAVEDAYNLTLKPWHGWISSAAYKIALKLVPDSETFANLLMAKDEKHETLVEEIDSFISQLSPFLEDIHNILVNTSITFSIRINSMTVYLLSKFMFLFSSETVQVRSLKVCIKKDQ 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13222203 13224336 - Lsi08G005280.1 Lsi08g00528 668454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00528 252 Pfam Glycolipid transfer protein (GLTP) 36 177 IPR014830 GO:0005737|GO:0120009|GO:0120013
Lsi08g00528 252 Gene3D Glycolipid transfer protein 35 209 IPR036497 -
Lsi08g00528 252 PANTHER GLYCOLIPID TRANSFER PROTEIN-RELATED 6 214 - -
Lsi08g00528 252 SUPERFAMILY Glycolipid transfer protein, GLTP 30 212 IPR036497 -
Lsi08g00528 252 PANTHER GLYCOLIPID TRANSFER PROTEIN 3 6 214 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00528 - - - bhj:120075712 431.795
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01744 Lsi-Chr5:24840392 Lsi08g00528 Lsi-Chr8:13222203 3.23E-40 transposed
Lsi02g01998 Lsi-Chr2:25963570 Lsi08g00528 Lsi-Chr8:13222203 7.63E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1228 Blo01g01330 . . . Bpe02g00611 . . Bma01g02114 Cmo04g02544 . . Cma09g01093 . . . Cpe06g00893 Cpe13g00667 Bhi04g01808 Tan11g1179 . . . . Lcy10g1323 Cla08g00667 Cam08g1098 Cec08g0683 Cco08g0792 Clacu08g0804 . Cre08g0608 Cone4ag1515 . Cone17ag0796 Cone20ag0394 . . . Cme03g00392 Blo17g00220 . . Bda13g01529 Bpe02g01113 Bpe14g00332 . Bma02g00278 . . Cmo09g01102 . . Car04g02342 Car09g00991 Cpe01g02103 . Bhi09g01506 . . . . . . . . . . . . . Lsi08g00528 . Chy03g00592 Cme01g00693
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002201 2 3 2 3 2 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 2 2 1 2 6 4 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00528 Lsi_Chr08 FPKM 4.225707 4.88912 27.499329 27.829046 29.122917 31.028557 27.80283 4.565524 4.397305 3.954732