Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00532 ATGTTGATGAACTCATCTTCTTCTCCGATCATCATCTTCTTCTTCTTGATTCTCTCCCATTTCCCCCTTCTTTCTCTTTCTTTCTCCCTCAGTCAAAACATTACCCTCTCCGGCGATGCCCATCTCAGAAACAACGCCATTTTCCTCACTCAAGAACTCAATTGCCTTCCCTTTTCTTCTAATTCCTCTTCCTCTTCTGGCTTCGGCACCGCCTTCTACATAAACCCTATTCGCTTTCTTGATTCCGCCACCAATTCCACCGCTTCTTTCTCCTCTCGCTTCTCCCTCTCCATCCTCCCCACCCCACTTTGCCCTTTCGCCGACGGAATTGCTTTCCTCATCACCTCCGATTCCAAATCTTTCAGCCGCTCTAATGGCTATATGGGCCTCCCCGACCCTCCTCTTAATTCCCATTACTCGTTCATCGCTGTCGAATTCGACACCAATTTCAACCCTAATCTCGGTGACATTAACGACAACCATCTCGGCCTTGATGTCAATTCAGCTACCTCTTTGACCTCTGTGGATTTTGGCTCCAGAGGCATTGTTCTCAAAAATGGCAGACAGATTACTGCTTGGATTGAGTACAGGGATGACTCGAAAATGATCCAGGTTTGGGTTGGTTATTCTCAAACAAGGCCTGTAAATCCTCTTCTAGTTGCGCAGATTGACCTTTCTAAGCAATTTAAAGAGTTTATGTATGTGGGATTCTCTGCTTCTAATGGACAGGGCTCTGCTCTTTACATTGTTGATAGATGGCGATTTAGAACTTTTGGGTTGATTCCTTCTTTGAGTCCTGTTGATACTATTAATGAAGGAGACTGTTTTATGTGTTCGTCGGAGGATTCAAATTCTAATAGTAGTCGTTTCGTTGATGCTCGTAAAAGGAGGAAGAAGATTGGAGAGATGACTCTTGGATTGGGAGGTTTGGCTGCATTTGTTTGTTCTATTACTGCAATTTTTGGTTTGGTTAGTTTTGTTTTGATAAAGAAGTTGAGAGGTAGAATGTGTGGAGGAAGAACAATCCACAGAACTTGTCAAGTTGAGATGAACAGAGTTCCAACAAGATTGTCTCTTGGGGAGATAAAGTTAGCTACAATGGGGTTTAATCAAAACAGAGTTGTTGGAGAAGGTGGTTCTGCAACTGTTTACAAAGGGTCTCTTGCATCAGGTGGAGAAGTGGCCATTAAACGTTTCGAGCGAGGCACGGCAAACAACCGTCTATGCAATCCTTTCACGACGGAGTTTGCAACGATGGCGGGATGCTTACGACACAAGAATTTGGTTCAGCTTCATGGATGGTGTTGCGAAGCAAATGAGTTGGTGCTTGTTTATGAGTACTTAGCCAATGGAAGCCTTGCCAAACTTCTTCACAAGACATCCCCCAATTCAGAATTTGTACTTCCTTGGAAGAAGAGGTTTTCCATAGTTCTTGGGGTTGCTTCTGCATTGACATATCTCCATGAAGAGTGTGAAAGCCAAATCATCCATAGAGATGTCAAGACTTGCAACATTATGCTTGATGCAGACTTCAACGCGAAACTCGGTGATTTTGGTCTAGCAGAAGTGTATGAACACAGTTCGATCACAAGAGAAGCAACCATACCAGCTGGAACAATGGGGTATCTTGCACCTGAATACGTTTATTCCGGTGTTCCCACTGTGAAAACTGATGTTTACAGCTTCGGTGTGGTGATGCTTGAAGTTGCTACGGGAAGGAGGCCTGTAAATGAAGACGGGACCGTGCTTGTCGATTGGATTTGGGATCTATGGGAAGTGGGGAAACTGATTGAAGCATCTGATTCAAGATTGATGGGAAATTACAATATAGTAGAAATGGAGAGAATGCTAATGGTAGGACTTTTTTGTGTACATCCAAATCATGAAAAGAGGCCAACTGTGAAAGAAGCTGCAAGAATTATTAAAGGGGAAGCACCACTTCCTGTACTGCCATCAAGGAAACCAAGGGTCAGCATTAGGCCTGTTTTTCCTGATGATTCTGAAGACATAGAAAACCCTTGTGCCGATTATCCCGCCTTCGACGAATCCGCGTGGATGACCCCCAAGAGTCAGTTTAGTTAG 2082 44.0 MLMNSSSSPIIIFFFLILSHFPLLSLSFSLSQNITLSGDAHLRNNAIFLTQELNCLPFSSNSSSSSGFGTAFYINPIRFLDSATNSTASFSSRFSLSILPTPLCPFADGIAFLITSDSKSFSRSNGYMGLPDPPLNSHYSFIAVEFDTNFNPNLGDINDNHLGLDVNSATSLTSVDFGSRGIVLKNGRQITAWIEYRDDSKMIQVWVGYSQTRPVNPLLVAQIDLSKQFKEFMYVGFSASNGQGSALYIVDRWRFRTFGLIPSLSPVDTINEGDCFMCSSEDSNSNSSRFVDARKRRKKIGEMTLGLGGLAAFVCSITAIFGLVSFVLIKKLRGRMCGGRTIHRTCQVEMNRVPTRLSLGEIKLATMGFNQNRVVGEGGSATVYKGSLASGGEVAIKRFERGTANNRLCNPFTTEFATMAGCLRHKNLVQLHGWCCEANELVLVYEYLANGSLAKLLHKTSPNSEFVLPWKKRFSIVLGVASALTYLHEECESQIIHRDVKTCNIMLDADFNAKLGDFGLAEVYEHSSITREATIPAGTMGYLAPEYVYSGVPTVKTDVYSFGVVMLEVATGRRPVNEDGTVLVDWIWDLWEVGKLIEASDSRLMGNYNIVEMERMLMVGLFCVHPNHEKRPTVKEAARIIKGEAPLPVLPSRKPRVSIRPVFPDDSEDIENPCADYPAFDESAWMTPKSQFS 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13287602 13289683 - Lsi08G005320.1 Lsi08g00532 668458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00532 693 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 259 IPR013320 -
Lsi08g00532 693 Pfam Legume lectin domain 27 257 IPR001220 GO:0030246
Lsi08g00532 693 CDD lectin_legume_LecRK_Arcelin_ConA 32 259 IPR001220 GO:0030246
Lsi08g00532 693 CDD STKc_IRAK 375 643 - -
Lsi08g00532 693 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 29 659 - -
Lsi08g00532 693 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
Lsi08g00532 693 SUPERFAMILY Protein kinase-like (PK-like) 349 639 IPR011009 -
Lsi08g00532 693 Gene3D - 22 261 - -
Lsi08g00532 693 PANTHER - 29 659 - -
Lsi08g00532 693 Gene3D Phosphorylase Kinase; domain 1 337 447 - -
Lsi08g00532 693 ProSitePatterns Legume lectins beta-chain signature. 142 148 IPR019825 -
Lsi08g00532 693 ProSiteProfiles Protein kinase domain profile. 369 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00532 693 Gene3D Transferase(Phosphotransferase) domain 1 448 645 - -
Lsi08g00532 693 SMART serkin_6 369 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00532 693 Pfam Protein kinase domain 369 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00532 693 ProSitePatterns Protein kinases ATP-binding region signature. 375 397 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01518 Lsi-Chr1:13235756 Lsi08g00532 Lsi-Chr8:13287602 1.89E-10 dispersed
Lsi03g00334 Lsi-Chr3:3971498 Lsi08g00532 Lsi-Chr8:13287602 4.18E-06 dispersed
Lsi05g00509 Lsi-Chr5:6389572 Lsi08g00532 Lsi-Chr8:13287602 3.51E-153 dispersed
Lsi08g00532 Lsi-Chr8:13287602 Lsi03g02130 Lsi-Chr3:32463610 2.01E-109 dispersed
Lsi08g00532 Lsi-Chr8:13287602 Lsi03g02126 Lsi-Chr3:32450062 3.27E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83831 PF00069 Pkinase 1.00E-43 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00532 - - csv:101206470 1080.86