Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00535 ATGGCAGATCCTTTTAGCTATGCAAATGCCGACCGTGATATCGAGCAGGCATTAATTGCATTGAAGAAGGGTGCTCAACTACTAAAATATGGTCGTAAAGGAAAGCCGAAGTTCTGTCCATTTAGGCTTTCTAGTGCAGTGATAATTCATGGATTAGCTGAGAAAGATGAATCTTCCTTGATCTGGATTTCAAGTAAGGGTGAAAGAAGTTTGAAGTTAGCGTCTATCTCACAAATTATTCCTGGACAAAGAACTGCTGTCTTCGAACGGTATCTTCGTCCAGAAAAGAATTCCTTATCATTCTCTCTTATATACAACAACGGGAAGCGATCCCTTGATCTGATTTGTAAGGATAAAGTTGAGGCAGAGGCTTGGATTTCAGGTCTGAAAGCTTTAATAGCATCTGGTCAAGGTGGGCGTTCCAAAATTGATGGCTGGAGTGATGGAGGCCTCTATCTTGATGAAAGTTGTGAATTGACTTCAAATAGCCCAAGTGACAGTTCGCACAGCGTGAATAGAGATAATAGCTCTCCAGAAGTTTTTGTCAGTTTCAACGCAAATATAACTCTGAAGACTTCTCAACCTGAAAATTACATTGCAAAGTCTGAAAGAGCTCATGTATCATTAAACCAAACAAATATGCAAGTAAAGGGCTCTAGTTCTGATGTTATGCGAGTTAGCGTTTCAAGTGCTCCCAGCACCTCTAGTCATGGGTCTGCACCCGATGATTGTGATGCTCTAGGTGATGTATACATATGGGGCGAGATTGTTGGTGACAATATTGTGAAGATTGGGGCTGAAAAAAATAGTAGTTATGTGACCTTGAGGACGGATGTGCTTCTGCCAAGACCTTTGGAGTCTAACACTGTTCTAGACATACATCACATAGCCTGTGGGGTTAGGCATGCTGCCCTAGTGACAAGGCAAGGGGAAGTTTTTACATGGGGTGAGGAATCTGGAGGCCGCCTTGGCCATGGTGTGGTGAAGGATGTAATTCAACCTCGTATGGTTGAATCCTTGGCAGCTAGTAGTATTGATTTTGTTGCTTGTGGAGAGTTCCATACATGTGCTGTTACAATAACCGGGGAACTTTATACATGGGGTGACGGTACCCACAATGCAGGGCTTCTTGGTCATGGCAGTGATGTCAGCCACTGGATACCAAAGAGAGTCTCTGGTCCGCTTGAAGGACTTCAAGTTACTTCAGTGACATGTGGTCCATGGCATACAGCTTTGGTAACGTCGATGGGTCAGCTTTTTACATTTGGTGATGGAACGTTTGGTGCACTGGGCCATGGAGACAGAGAAAATATTTCATATCCAAAAGAAGTGGAATCTTTATCAGGCCTGAGGACAATTGCTGTTGCATGTGGGGTGTGGCATACTGCTGCTGTAGTTGAAGTTATTGTGACACAATCTAGTTCGAGCCTTTCATCAGGTAAACTTTTTACATGGGGTGATGGAGATAAAAATCGTCTGGGACATGGAGATAAGGAGCCGAGGCTTAAACCCACATGTGTGCCGGCACTAATCGATTATGATTTCCACAAAGTTGCTTGTGGTCACAGCATTACTGTTGGTTTGACCACTTCAGGGCAAGTTTTCTCCATGGGAAGTACTGTTTATGGACAACTTGGGAATCCTAGTGCAGATGGAAAGATACCTTGCTTGGTAGAGGATAAGCTTTTTGGGGAATCTGTTGAAGAAGTTTCATGTGGTGCATATCATGTGGTGGTATTAACGTCCAAAAATGAAGTTTATACGTGGGGAAAGGGTGCAAATGGGAGATTGGGCCATGGTGATGTTGAAGATAGGAAGATACCAACTTTGGTAGAAGCTTTGAAGGATAGACATGTGAAATATATAGCATGTGGTTCAAATTACACAGCTGCCATTTGTCTTCACAAATGGGTTTCTAGTGCTGAGCAGTCACAGTGCTCTGCTTGCAGACAGGCATTTGGGTTTACACGGAAGAGACACAACTGTTATAATTGTGGACTTGTGCATTGCCACTCTTGCAGTTCAAGAAAAGCATTAAGGGCAGCACTTGCTCCTAATCCCGGCAAACTATATCGTGTATGTGATTCATGTTATGCAAAACTGATTAAGGCAGCAGAAGCTATTAATAATAATAGGAAAAATGCTATGCCTCGCCTCTCAGGCGAGAACAAGGACAGGATTGATAAGACTGATATGAAAATATCGAAGTCAGTTCCTTCCAACATGGATTTGATAAAGCAATTAGACAACAAAGCGGCTAAACAAGGAAAGAAGGCTGATACCTTCTCCCTTGTCCGATCCTCTCAAGCACCTTCACTATTGCAGCTCAGAGATGTTGTATTATCAACTGCTGTTGATCTGCGACGGACAGCTCCCAAACCAGTCCTCACTGCTTCTGGAGTAAGTTCTAGATCTGTGTCACCTTTCTCAAGGAAACCAAGCCCTCCTCGATCTGCCACTCCTGTTCCTACAGCATCAGGACTTTCCTTTTCCAAAAGTATAACTGATAGTTTGAAGAAAACAAACGATCTTTTGAATCATGAAGTGCATAAATTGCGTTCACAGGTTGAGAGCCTGAGGCAGAAATGTGAACTCCAGGAACTGGAGCTTCAGAAATCTTCGAAGAAAACACGAGAAGCTATGGCCTTGGCTGCCGAGGAATCTGGTAAATCTAAAGCAGCCAAAGAAGTCATCAAGTTACTAACTGCTCAGCTTAAAGATATGGCTGAGAGGTTACCACCTGGAGTATATGACGCTGAGAAAATGAGATCGGTTCATCTTTCAAATGGTTTGGAGTCAAATGGCGGTTACCATTTGAGTATGAATGGAGAGCGTCATTCACGATCTGATTCAGTTAGCAGCTACTCCTGTGCATCTCCAACAGCATCTGAAGCTGCTGCTTGGCAAGGAAGCTATGGCACAACTCATTCATATAGGGAGCTTTCTGGAACGAATGAAAGTACTCTGCTACAAGGAATTGACAGTCGAGATTCTAGACTTCCAAATAGTGGAGGTGCTCAGCCAGTTAGCAGTAGTGCATCGGTGGCAGCTGTTGGCAAGGAGTCTGAGTCCTTACAAGATGGTGACAATAATTCTAAAGCCAAAACTTCTCTACTGGTTAATGCTACTCAAGTTGAGGCTGAATGGATTGAACAATATGAGCCTGGTGTATATATTACTCTTGTGGCTCTGCGGGATGGTACTCGGGATCTAAAACGTGTGCGCTTCAGCCGGAGAAGATTTGGAGAGCACCAAGCAGAAAATTGGTGGTCGGAGAATCGAGACAAGGTATACGAGAGATATAATGTTCGCAGCTCGGACAAGTCTTCAGTTTCGGGACTGACATCACAGAGGGCTGACGATGCAGTTTCAATAGCTTCCCAGCAACTATAG 3393 43.71 MADPFSYANADRDIEQALIALKKGAQLLKYGRKGKPKFCPFRLSSAVIIHGLAEKDESSLIWISSKGERSLKLASISQIIPGQRTAVFERYLRPEKNSLSFSLIYNNGKRSLDLICKDKVEAEAWISGLKALIASGQGGRSKIDGWSDGGLYLDESCELTSNSPSDSSHSVNRDNSSPEVFVSFNANITLKTSQPENYIAKSERAHVSLNQTNMQVKGSSSDVMRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEIVGDNIVKIGAEKNSSYVTLRTDVLLPRPLESNTVLDIHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVVKDVIQPRMVESLAASSIDFVACGEFHTCAVTITGELYTWGDGTHNAGLLGHGSDVSHWIPKRVSGPLEGLQVTSVTCGPWHTALVTSMGQLFTFGDGTFGALGHGDRENISYPKEVESLSGLRTIAVACGVWHTAAVVEVIVTQSSSSLSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYDFHKVACGHSITVGLTTSGQVFSMGSTVYGQLGNPSADGKIPCLVEDKLFGESVEEVSCGAYHVVVLTSKNEVYTWGKGANGRLGHGDVEDRKIPTLVEALKDRHVKYIACGSNYTAAICLHKWVSSAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKLYRVCDSCYAKLIKAAEAINNNRKNAMPRLSGENKDRIDKTDMKISKSVPSNMDLIKQLDNKAAKQGKKADTFSLVRSSQAPSLLQLRDVVLSTAVDLRRTAPKPVLTASGVSSRSVSPFSRKPSPPRSATPVPTASGLSFSKSITDSLKKTNDLLNHEVHKLRSQVESLRQKCELQELELQKSSKKTREAMALAAEESGKSKAAKEVIKLLTAQLKDMAERLPPGVYDAEKMRSVHLSNGLESNGGYHLSMNGERHSRSDSVSSYSCASPTASEAAAWQGSYGTTHSYRELSGTNESTLLQGIDSRDSRLPNSGGAQPVSSSASVAAVGKESESLQDGDNNSKAKTSLLVNATQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAENWWSENRDKVYERYNVRSSDKSSVSGLTSQRADDAVSIASQQL 1130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13316285 13326380 + Lsi08G005350.1 Lsi08g00535 668461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00535 1130 ProSiteProfiles BRX domain profile. 1047 1102 IPR013591 -
Lsi08g00535 1130 Pfam Pleckstrin homology domain 16 133 IPR001849 -
Lsi08g00535 1130 MobiDBLite consensus disorder prediction 936 956 - -
Lsi08g00535 1130 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 480 531 IPR000408 -
Lsi08g00535 1130 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 248 309 IPR000408 -
Lsi08g00535 1130 Gene3D - 473 641 IPR009091 -
Lsi08g00535 1130 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1109 - -
Lsi08g00535 1130 Coils Coil 891 911 - -
Lsi08g00535 1130 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 310 361 IPR000408 -
Lsi08g00535 1130 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 584 635 IPR000408 -
Lsi08g00535 1130 Pfam Regulator of chromosome condensation (RCC1) repeat 310 358 IPR000408 -
Lsi08g00535 1130 Pfam Regulator of chromosome condensation (RCC1) repeat 531 580 IPR000408 -
Lsi08g00535 1130 Pfam Regulator of chromosome condensation (RCC1) repeat 362 412 IPR000408 -
Lsi08g00535 1130 Pfam Regulator of chromosome condensation (RCC1) repeat 479 526 IPR000408 -
Lsi08g00535 1130 Pfam Regulator of chromosome condensation (RCC1) repeat 417 465 IPR000408 -
Lsi08g00535 1130 Pfam Regulator of chromosome condensation (RCC1) repeat 585 632 IPR000408 -
Lsi08g00535 1130 MobiDBLite consensus disorder prediction 796 813 - -
Lsi08g00535 1130 Gene3D - 173 472 IPR009091 -
Lsi08g00535 1130 SUPERFAMILY FYVE/PHD zinc finger 636 712 IPR011011 -
Lsi08g00535 1130 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 417 468 IPR000408 -
Lsi08g00535 1130 SUPERFAMILY PH domain-like 13 133 - -
Lsi08g00535 1130 Pfam FYVE zinc finger 636 701 IPR000306 GO:0046872
Lsi08g00535 1130 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 362 416 IPR000408 -
Lsi08g00535 1130 Gene3D - 13 139 IPR011993 -
Lsi08g00535 1130 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1109 - -
Lsi08g00535 1130 SUPERFAMILY RCC1/BLIP-II 247 637 IPR009091 -
Lsi08g00535 1130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 642 713 IPR013083 -
Lsi08g00535 1130 MobiDBLite consensus disorder prediction 796 827 - -
Lsi08g00535 1130 PRINTS Chromosome condensation regulator RCC1 signature 403 419 IPR000408 -
Lsi08g00535 1130 PRINTS Chromosome condensation regulator RCC1 signature 419 433 IPR000408 -
Lsi08g00535 1130 PRINTS Chromosome condensation regulator RCC1 signature 312 328 IPR000408 -
Lsi08g00535 1130 PRINTS Chromosome condensation regulator RCC1 signature 521 539 IPR000408 -
Lsi08g00535 1130 PRINTS Chromosome condensation regulator RCC1 signature 362 378 IPR000408 -
Lsi08g00535 1130 PRINTS Chromosome condensation regulator RCC1 signature 579 600 IPR000408 -
Lsi08g00535 1130 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 455 465 IPR000408 -
Lsi08g00535 1130 CDD PH_PLC_plant-like 12 134 - -
Lsi08g00535 1130 Pfam Transcription factor regulating root and shoot growth via Pin3 1046 1101 IPR013591 -
Lsi08g00535 1130 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 296 306 IPR000408 -
Lsi08g00535 1130 MobiDBLite consensus disorder prediction 994 1032 - -
Lsi08g00535 1130 CDD FYVE_like_SF 645 698 - -
Lsi08g00535 1130 Pfam Transcription factor BRX N-terminal domain 886 921 IPR027988 -
Lsi08g00535 1130 Coils Coil 842 876 - -
Lsi08g00535 1130 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 532 583 IPR000408 -
Lsi08g00535 1130 MobiDBLite consensus disorder prediction 994 1019 - -
Lsi08g00535 1130 SMART fyve_4 635 703 IPR000306 GO:0046872
Lsi08g00535 1130 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 640 702 IPR017455 -
Lsi08g00535 1130 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 403 413 IPR000408 -
Lsi08g00535 1130 ProSiteProfiles PH domain profile. 101 134 IPR001849 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00535 - - - csv:116404564 2103.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00572 Lsi-Chr6:7446725 Lsi08g00535 Lsi-Chr8:13316285 0 dispersed
Lsi07g01140 Lsi-Chr7:16845671 Lsi08g00535 Lsi-Chr8:13316285 7.71E-15 dispersed
Lsi08g00535 Lsi-Chr8:13316285 Lsi10g01085 Lsi-Chr10:15110776 0 dispersed
Lsi11g00169 Lsi-Chr11:1783601 Lsi08g00535 Lsi-Chr8:13316285 7.77E-09 dispersed
Lsi03g01337 Lsi-Chr3:24254853 Lsi08g00535 Lsi-Chr8:13316285 0 transposed
Lsi02g01993 Lsi-Chr2:25879979 Lsi08g00535 Lsi-Chr8:13316285 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00535 Lsi_Chr08 FPKM 4.441463 4.964868 16.695356 17.786652 66.523293 56.688332 60.001347 25.033434 26.237299 25.285673