Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00545 ATGGCGGATATGGATTTCGTTGAGGGCGTTGGAGAGAGTTCTTCGCCGCCTCGAAGCTTTGGTGGCTTCTGTGCTGTCCACGATGTTCGGAACGATGTTTATACTCGGTTAGTTGAGTGTGGACATGAAGAGGCCGTTTCTAATCCCCAATTTCGCGAGAACTTGGATGCTCACTTCAATCGCTTGCCTCCGAGTTATGGACTTGATGTTAACATGGAGAAGGTGGAAGATGTTTTGTTACATCAAAAGCTTCTTTTCCTAGCAAAGGATCCAGAGAAGTGCCCTGTTTACCACATTCGTTTTCTGGAGCACATAAGTACTAAGTCAGATGGCAATGATGATCACGTTTTTCTTGATAGTATTCTTTTAAGTGGTTCATCTAATGAAGCAGCTGATGGAAAACTTCCACTATCACACAAGAGAACTCGAGGAAATATAATTGACTTTGAGCCTTGTTCCAAGCTTGAGGACTTAAATTTGGATGTTAGAAAAAACTCAAAGGCCGTGGATAGGAGGGTGGGTAATATTGCACATGTTCTGATACACGAAGTGATATTTTCAACGATTGACAAGCCAAAGCTTCTTAGCCAGCTTTCTGCTTTGCTTTCTGATATAGGACTTAACATTCGGGAAGCACATGTGTTTTCAACATCTGATGGTTACTCCTTGGATGTATTTGTGGTGGATGGATGGCCTGTTGAGGAAACTGATGGCTTGTACGAAGCTATGGAAAAAGCAGTGGCTAGATATGAGGGATCGTGGTCTGGTTCTTCACATTCTCATCCGGCAGTCAAGAAAACATTAGATGCCCAGGAAAAATCAGCAGATTGGGAAATAGACAGACGGTTACTGAAGATAGGTGAAAGAATTGCATCTGGATCTTGTGGTGATTTGTACCGTGGATTTTATCTTGGTCAAGATGTAGCTGTCAAGATATTAAGATCTGAAGATCTAAATGATGATTTAGAGGATGAATTCAATCAAGAAGTGGCAATTCTCAGGAAGGTCCAGCATAAAAATGTAGTTCGTTTTATAGAGTATATGCCAGGAGGGAGTCTTTATGATTACTTGCACAAGAATCATTGCGTGTTGAAGCTCTCTCAACTGCTGAAGTTTGCTATTGATGTTTGTGAAGGAATGGGATACTTACATTTAAATAACATTATCCATAGAGACTTGAAGACGGCAAATCTGCTGATGGACACTCAGCATGTGGCAGATTTTGGAGTTGCACGATACCAGAGTCAAGGAGTAATGACAGCAGAAACTGGAACATACAGATGGATGGCACCTGAGGTAATAAATCATCTGCCATATGATCAGAAAGCAGATGTTTTCAGTTTTGCTATTGTGCTGTGGGAACTAGTAACAGCAAAGGGACTACGTCCAGATCTTCCCAAAAACGTTCACCCCAAATTGTTGGATTTGATGCAAAGATGTTGGGATGCAGAACCTGTAAATCGGCCTCCATTTACCGAGATAAAAGTTGAACTCGAAAATCTCCTCGAAGAAGTTGAGGTATACTCTTCCCCGTCTTTACAACCTTATGGATAA 1554 41.57 MADMDFVEGVGESSSPPRSFGGFCAVHDVRNDVYTRLVECGHEEAVSNPQFRENLDAHFNRLPPSYGLDVNMEKVEDVLLHQKLLFLAKDPEKCPVYHIRFLEHISTKSDGNDDHVFLDSILLSGSSNEAADGKLPLSHKRTRGNIIDFEPCSKLEDLNLDVRKNSKAVDRRVGNIAHVLIHEVIFSTIDKPKLLSQLSALLSDIGLNIREAHVFSTSDGYSLDVFVVDGWPVEETDGLYEAMEKAVARYEGSWSGSSHSHPAVKKTLDAQEKSADWEIDRRLLKIGERIASGSCGDLYRGFYLGQDVAVKILRSEDLNDDLEDEFNQEVAILRKVQHKNVVRFIEYMPGGSLYDYLHKNHCVLKLSQLLKFAIDVCEGMGYLHLNNIIHRDLKTANLLMDTQHVADFGVARYQSQGVMTAETGTYRWMAPEVINHLPYDQKADVFSFAIVLWELVTAKGLRPDLPKNVHPKLLDLMQRCWDAEPVNRPPFTEIKVELENLLEEVEVYSSPSLQPYG 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13577550 13590978 - Lsi08G005450.1 Lsi08g00545 668471

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00545 517 SMART serkin_6 284 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00545 517 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 13 509 - -
Lsi08g00545 517 Gene3D Transferase(Phosphotransferase) domain 1 351 512 - -
Lsi08g00545 517 PRINTS Tyrosine kinase catalytic domain signature 382 400 IPR001245 GO:0004672|GO:0006468
Lsi08g00545 517 PRINTS Tyrosine kinase catalytic domain signature 443 465 IPR001245 GO:0004672|GO:0006468
Lsi08g00545 517 PRINTS Tyrosine kinase catalytic domain signature 345 358 IPR001245 GO:0004672|GO:0006468
Lsi08g00545 517 SUPERFAMILY ACT-like 182 252 IPR045865 -
Lsi08g00545 517 Pfam Protein tyrosine and serine/threonine kinase 284 497 IPR001245 GO:0004672|GO:0006468
Lsi08g00545 517 ProSiteProfiles ACT domain profile. 183 257 IPR002912 -
Lsi08g00545 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 388 400 IPR008271 GO:0004672|GO:0006468
Lsi08g00545 517 CDD STKc_MAP3K-like 290 494 - -
Lsi08g00545 517 Gene3D Phosphorylase Kinase; domain 1 270 350 - -
Lsi08g00545 517 ProSiteProfiles Protein kinase domain profile. 284 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00545 517 SUPERFAMILY Protein kinase-like (PK-like) 276 510 IPR011009 -
Lsi08g00545 517 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 13 509 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00545 - - - csv:101216231 919.457
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01782 Lsi08g00545 CCT
Lsi04g01782 Lsi08g00545 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01782 Lsi-Chr4:25024973 Lsi08g00545 Lsi-Chr8:13577550 1.58E-97 dispersed
Lsi08g00545 Lsi-Chr8:13577550 Lsi11g01225 Lsi-Chr11:20841418 2.81E-79 dispersed
Lsi08g00545 Lsi-Chr8:13577550 Lsi07g01075 Lsi-Chr7:16102866 3.88E-137 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g154 Blo01g01614 . . . Bpe02g00332 . . Bma01g02388 Cmo04g02557 . Cma01g01992 . Car01g01564 . . . . . . . . . . . . . . . . . . . Cone7ag1915 Cone17ag0791 Cone20ag0386 Lsi04g01782 . Chy04g00388 . . . . . . . . . . . . . . Car04g02350 Car15g00559 Cpe01g02111 Cpe02g00053 . . . . . . . Cla05g01594 . . . . . . Lsi08g00545 . . .
Vvi18g1256 . . . . . . . . Cmo04g02557 Cmo15g00611 . . . . . . Cpe13g00675 Bhi04g01791 . . . . . Lcy10g1341 Cla08g00702 . . . . . . . . Cone17ag0791 Cone20ag0386 . . . Cme03g00342 . Blo18g00215 . Bda13g01522 Bpe02g01606 . Bma01g00863 Bma02g00273 . . . . . Car05g00693 Car15g00559 Cpe01g02111 . . . . . . . . . . . . . . . Lsi08g00545 . Chy03g00525 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004128 3 1 1 5 1 1 3 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83832 PF07714 PK_Tyr_Ser-Thr 3.90E-40 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00545 Lsi_Chr08 FPKM 4.258029 7.349456 1.450282 1.984415 28.326221 25.668461 25.893938 0.173743 0.147414 0.0
Lsi08g00545 Lsi_Chr17 FPKM 28.545012 30.238485 3.007509 3.095096 67.360008 71.87809 69.004425 0.145459 0.0 0.344536