Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00548 ATGGCTGCAACTTCTGGTGCTGTGCTTAATGGCTTGGGTTCACCCTTCCTCCGTGGAGGTAGCAGAACTCACACCTTGTTGGCTGGAGTCCGAGGCAGTGTCAATGTTGTTGCCTCTCGCAAGCTTGTCGTTGTCGCTGCTGCTCAGGCGAAGAAGTCTTGGCTCCCTGGCGTTAGAGGTGGCGGCAACTTGGTCGACCCAGAATGGCTTGATGGCTCACTTCCAGGCGACTTCGGGTTCGACCCATTGGGGTTGGGGAAGGACCCAGCATTTCTGAAGTGGTACAGAGAGGCAGAGCTGATCCATGGCCGGTGGGCAATGGCAGCAGTTGTCGGAATCTTCGTAGGACAAGCCTGGAGTGGGATCCCATGGTTCGAAGCCGGAGCAGATCCAGGCGCAATTGCTCCATTCTCCTTCGGATCACTGCTAGGAACCCAGCTTCTGTTAATGGGATGGGTGGAAAGCAAGCGATGGGTGGATTTCTTCAACCCAGAATCTCAATCGGTGGAATGGGCGACGCCATGGTCGAGGACGGCTGAGAACTTCGCAAACGCAACCGGAGAACAAGGGTATCCCGGAGGAAAATTCTTCGATCCATTGGGATTTGCAGGAACTATTAAAGATGGGGTTTACATTCCGGACACGGAGAAATTGGAGAGATTGAAGTTGGCGGAGATCAAACATGCTAGGATCGCCATGTTAGCAATGCTCATCTTCTACTTTGAAGCTGGACAGGGGAAGACACCATTGGGTGCTCTTGGATTGTAA 768 53.26 MAATSGAVLNGLGSPFLRGGSRTHTLLAGVRGSVNVVASRKLVVVAAAQAKKSWLPGVRGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13635761 13637637 + Lsi08G005480.1 Lsi08g00548 668474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00548 255 Gene3D Chlorophyll a/b binding protein domain 67 254 - -
Lsi08g00548 255 Pfam Chlorophyll A-B binding protein 67 243 IPR022796 -
Lsi08g00548 255 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 2 255 - -
Lsi08g00548 255 SUPERFAMILY Chlorophyll a-b binding protein 64 255 - -
Lsi08g00548 255 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 255 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00548 Lsi-Chr8:13635761 Lsi08g01472 Lsi-Chr8:22846371 1.06E-37 dispersed
Lsi08g00548 Lsi-Chr8:13635761 Lsi06g01458 Lsi-Chr6:25126453 3.61E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00548 K08917 - csv:101204705 499.59