Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00550 ATGGATTTGAACTTTACCTCCCGGAAGCCACCGCAGACGGCGGCGAGGATGGACATAGAACAGATGCCGGAGATTCCAGAGCGCGGGTATCACCACCGCCGTTCTCACTCCGATACCTCCTTCCGCTTCGCTAATTTCGACGATCTTCTCCTCTTTGACCCTCCCGACATCGATTTGTCATCTGCTCTTCCCTCTCCCTCGCCGTCACCGTCTCCGACGCCGTCAGGGGCTCGTATGGCCGTCGATTCATTCAATTCGAAGTCCGCTGAAGACACCTCTGCCACAAAATCTAGGGCTGGAAACGGTAATTCCGCTTCCTTCTTCAGTTCTCACTACCGGAGCTTATCGATGGATTCCGACTTCTTCGAGGGATTGGGGATGGCCGGAGATGGAAGTGACGGTGAAGTACTTGGCGGGAGAGTAACGGCGGGGGAGAAGAAGATGAGTCGTCATAGGCATAGCAATTCCATGGATGGGTCTTTGACTTCCTCGTTTGAAGCTGATTCCACCGTGGGAATTGATTGCTCCAAGAAAGCCATGGCACCTGATAAACTCGCTGAGCTTGCTTTGATGGATCCTAAAAGAGCTAAGAGGTTGATTCTGGCGAATAGACAATCTGCTGCACGGTCGAAGGAGAGGAAAATACGTTACACTAATGAACTAGAGAAGAAAGTGCAGATGCTTCAGTCAGAAGCCACTTCCCTTTCTGCTCAGGTCACAGTGTTACAGCTATCAAGTGGACTTGTTATGCTGATGGAAGAACTGAGAGATACCACTGGATTGACTACTGAGAACAGAGAACTCAAGTTAAGGTTGCAAGCCATGGAGCAGCAAGCCCATCTGAGGGATGGTATGTGTGCTTTGAATGAGACACTGAAGGAGGAAGTGCAGCGGCTTAAGTTAGCTGCTGCCCAACTGCCTGTTGCAAATGGCAACTCATTCAACATTGGAGGAGGGCTACCCCCTCAATTCCCTCCTCTCCAAACATCATTGCTTCAATTTGGCAACTCCCAGAATCATCAACAGCCACAGCTGCTTCACGTGTCTCAGCCTGATGCTCGAGGAGGGTCTTCACCGTCCCAGCTTCCCAGAGTTTAA 1098 50.91 MDLNFTSRKPPQTAARMDIEQMPEIPERGYHHRRSHSDTSFRFANFDDLLLFDPPDIDLSSALPSPSPSPSPTPSGARMAVDSFNSKSAEDTSATKSRAGNGNSASFFSSHYRSLSMDSDFFEGLGMAGDGSDGEVLGGRVTAGEKKMSRHRHSNSMDGSLTSSFEADSTVGIDCSKKAMAPDKLAELALMDPKRAKRLILANRQSAARSKERKIRYTNELEKKVQMLQSEATSLSAQVTVLQLSSGLVMLMEELRDTTGLTTENRELKLRLQAMEQQAHLRDGMCALNETLKEEVQRLKLAAAQLPVANGNSFNIGGGLPPQFPPLQTSLLQFGNSQNHQQPQLLHVSQPDARGGSSPSQLPRV 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13658514 13661368 - Lsi08G005500.1 Lsi08g00550 668476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00550 365 Coils Coil 258 278 - -
Lsi08g00550 365 Coils Coil 218 238 - -
Lsi08g00550 365 SMART brlzneu 190 257 IPR004827 GO:0003700|GO:0006355
Lsi08g00550 365 MobiDBLite consensus disorder prediction 60 103 - -
Lsi08g00550 365 CDD bZIP_plant_RF2 195 243 IPR044759 GO:0003700|GO:0006355
Lsi08g00550 365 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 6 350 - -
Lsi08g00550 365 MobiDBLite consensus disorder prediction 21 36 - -
Lsi08g00550 365 MobiDBLite consensus disorder prediction 1 36 - -
Lsi08g00550 365 Gene3D - 193 246 - -
Lsi08g00550 365 SUPERFAMILY Leucine zipper domain 195 243 IPR046347 GO:0003700|GO:0006355
Lsi08g00550 365 MobiDBLite consensus disorder prediction 74 103 - -
Lsi08g00550 365 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 193 243 IPR004827 GO:0003700|GO:0006355
Lsi08g00550 365 MobiDBLite consensus disorder prediction 338 365 - -
Lsi08g00550 365 Pfam bZIP transcription factor 194 240 IPR004827 GO:0003700|GO:0006355
Lsi08g00550 365 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 6 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02018 Lsi-Chr2:26179653 Lsi08g00550 Lsi-Chr8:13658514 6.41E-106 dispersed
Lsi08g00550 Lsi-Chr8:13658514 Lsi10g01485 Lsi-Chr10:18966125 1.57E-54 dispersed
Lsi08g00550 Lsi-Chr8:13658514 Lsi11g01421 Lsi-Chr11:22748437 7.54E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25736 PF00170 bZIP_1 1.50E-06 CL0018 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00550 K20557 - csv:101215277 469.929