Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi08g00550 | ATGGATTTGAACTTTACCTCCCGGAAGCCACCGCAGACGGCGGCGAGGATGGACATAGAACAGATGCCGGAGATTCCAGAGCGCGGGTATCACCACCGCCGTTCTCACTCCGATACCTCCTTCCGCTTCGCTAATTTCGACGATCTTCTCCTCTTTGACCCTCCCGACATCGATTTGTCATCTGCTCTTCCCTCTCCCTCGCCGTCACCGTCTCCGACGCCGTCAGGGGCTCGTATGGCCGTCGATTCATTCAATTCGAAGTCCGCTGAAGACACCTCTGCCACAAAATCTAGGGCTGGAAACGGTAATTCCGCTTCCTTCTTCAGTTCTCACTACCGGAGCTTATCGATGGATTCCGACTTCTTCGAGGGATTGGGGATGGCCGGAGATGGAAGTGACGGTGAAGTACTTGGCGGGAGAGTAACGGCGGGGGAGAAGAAGATGAGTCGTCATAGGCATAGCAATTCCATGGATGGGTCTTTGACTTCCTCGTTTGAAGCTGATTCCACCGTGGGAATTGATTGCTCCAAGAAAGCCATGGCACCTGATAAACTCGCTGAGCTTGCTTTGATGGATCCTAAAAGAGCTAAGAGGTTGATTCTGGCGAATAGACAATCTGCTGCACGGTCGAAGGAGAGGAAAATACGTTACACTAATGAACTAGAGAAGAAAGTGCAGATGCTTCAGTCAGAAGCCACTTCCCTTTCTGCTCAGGTCACAGTGTTACAGCTATCAAGTGGACTTGTTATGCTGATGGAAGAACTGAGAGATACCACTGGATTGACTACTGAGAACAGAGAACTCAAGTTAAGGTTGCAAGCCATGGAGCAGCAAGCCCATCTGAGGGATGGTATGTGTGCTTTGAATGAGACACTGAAGGAGGAAGTGCAGCGGCTTAAGTTAGCTGCTGCCCAACTGCCTGTTGCAAATGGCAACTCATTCAACATTGGAGGAGGGCTACCCCCTCAATTCCCTCCTCTCCAAACATCATTGCTTCAATTTGGCAACTCCCAGAATCATCAACAGCCACAGCTGCTTCACGTGTCTCAGCCTGATGCTCGAGGAGGGTCTTCACCGTCCCAGCTTCCCAGAGTTTAA | 1098 | 50.91 | MDLNFTSRKPPQTAARMDIEQMPEIPERGYHHRRSHSDTSFRFANFDDLLLFDPPDIDLSSALPSPSPSPSPTPSGARMAVDSFNSKSAEDTSATKSRAGNGNSASFFSSHYRSLSMDSDFFEGLGMAGDGSDGEVLGGRVTAGEKKMSRHRHSNSMDGSLTSSFEADSTVGIDCSKKAMAPDKLAELALMDPKRAKRLILANRQSAARSKERKIRYTNELEKKVQMLQSEATSLSAQVTVLQLSSGLVMLMEELRDTTGLTTENRELKLRLQAMEQQAHLRDGMCALNETLKEEVQRLKLAAAQLPVANGNSFNIGGGLPPQFPPLQTSLLQFGNSQNHQQPQLLHVSQPDARGGSSPSQLPRV | 365 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 13658514 | 13661368 | - | Lsi08G005500.1 | Lsi08g00550 | 668476 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi08g00550 | 365 | Coils | Coil | 258 | 278 | - | - | |
Lsi08g00550 | 365 | Coils | Coil | 218 | 238 | - | - | |
Lsi08g00550 | 365 | SMART | brlzneu | 190 | 257 | IPR004827 | GO:0003700|GO:0006355 | |
Lsi08g00550 | 365 | MobiDBLite | consensus disorder prediction | 60 | 103 | - | - | |
Lsi08g00550 | 365 | CDD | bZIP_plant_RF2 | 195 | 243 | IPR044759 | GO:0003700|GO:0006355 | |
Lsi08g00550 | 365 | PANTHER | BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED | 6 | 350 | - | - | |
Lsi08g00550 | 365 | MobiDBLite | consensus disorder prediction | 21 | 36 | - | - | |
Lsi08g00550 | 365 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Lsi08g00550 | 365 | Gene3D | - | 193 | 246 | - | - | |
Lsi08g00550 | 365 | SUPERFAMILY | Leucine zipper domain | 195 | 243 | IPR046347 | GO:0003700|GO:0006355 | |
Lsi08g00550 | 365 | MobiDBLite | consensus disorder prediction | 74 | 103 | - | - | |
Lsi08g00550 | 365 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 193 | 243 | IPR004827 | GO:0003700|GO:0006355 | |
Lsi08g00550 | 365 | MobiDBLite | consensus disorder prediction | 338 | 365 | - | - | |
Lsi08g00550 | 365 | Pfam | bZIP transcription factor | 194 | 240 | IPR004827 | GO:0003700|GO:0006355 | |
Lsi08g00550 | 365 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 6 | 350 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g02018 | Lsi-Chr2:26179653 | Lsi08g00550 | Lsi-Chr8:13658514 | 6.41E-106 | dispersed | |
Lsi08g00550 | Lsi-Chr8:13658514 | Lsi10g01485 | Lsi-Chr10:18966125 | 1.57E-54 | dispersed | |
Lsi08g00550 | Lsi-Chr8:13658514 | Lsi11g01421 | Lsi-Chr11:22748437 | 7.54E-09 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25736 | PF00170 | bZIP_1 | 1.50E-06 | CL0018 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi08g00550 | K20557 | - | csv:101215277 | 469.929 |