Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00551 ATGGATCCCAACAAATTAAACCTAAGTACTTTGGAGCAACAATCCAATTTGGAAATCCAAACAAAAGAATTTGACTACTCGAAACGCGCACAATGGCTACGTGCCGCCGTGCTCGGTGCCAACGACGGGCTCGTCTCAACTGCGTCGCTTATGATGGGAGTTGGAGCTGTGAAACAAGACATCAAGGCCATGATCCTCACCGGTTTCGCCGGGTTAGTCGCCGGGGCGTGTAGTATGGCAATCGGCGAGTTTGTGTCTGTTTACTCTCAATTAGACATTGAAATGGCTCAAATAAAAAGAGAGAAATTACAAAGAAGTAGTAATATGGAAGGAGGAGGAGTAGTACAAGGACAAGAGAGCAAAGATGAAGAAAAACTACCAAATCCACTCCAAGCAGCTGCAGCCTCTGCCTTGGCATTCTCTCTAGGAGCAATGGTTCCACTATTGGCAGCTTCCTTTATAAGAGAATATAAAGTAAGGCTCGCGGTGGTCGTGGCAGCGGTTACGTTAGCTCTCGTCGTGTTTGGGTGGTTGGGTGCTATTCTTGGAAAAGCATCACCGATCAAATCAGCTTCTAGAGTGTTGGTCGGAGGTTGGTTAGCTATGGCTATAACCTTTGGCTTGACAAAGCTAATCGGAGCAAGCGGACTCTAA 654 46.79 MDPNKLNLSTLEQQSNLEIQTKEFDYSKRAQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIEMAQIKREKLQRSSNMEGGGVVQGQESKDEEKLPNPLQAAAASALAFSLGAMVPLLAASFIREYKVRLAVVVAAVTLALVVFGWLGAILGKASPIKSASRVLVGGWLAMAITFGLTKLIGASGL 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13677376 13678029 + Lsi08G005510.1 Lsi08g00551 668477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00551 217 Pfam VIT family 33 108 IPR008217 GO:0005384|GO:0030026
Lsi08g00551 217 Pfam VIT family 122 209 IPR008217 GO:0005384|GO:0030026
Lsi08g00551 217 PANTHER VACUOLAR IRON TRANSPORTER HOMOLOG 1-RELATED 18 214 - -
Lsi08g00551 217 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 18 214 IPR008217 GO:0005384|GO:0030026
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02019 Lsi-Chr2:26203892 Lsi08g00551 Lsi-Chr8:13677376 1.08E-73 dispersed
Lsi03g00875 Lsi-Chr3:15063882 Lsi08g00551 Lsi-Chr8:13677376 5.17E-76 dispersed
Lsi08g00551 Lsi-Chr8:13677376 Lsi09g00700 Lsi-Chr9:7925012 4.38E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00551 K22736 - csv:101204048 374.015