Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00552 ATGTTGTATAAAGTGCTGCAGAAGTTCAGGTACTGGGATCCTAGGCTCTCTTCTTCTTATGCCCTCAAATTCTTCCTTAGGAACTTTTCTCTATGGTCAATGAAGAAAGATCCAGACCTTGAATCAGCTCTATCTCGTAATCGTCGATGGATTGTCAATAACCAAATCAAGAATATCATCCTTCGTTGCCCCAACCAGGCAGCACCTGTAAAATTTCTCCAAAAGAAGTTCAAAACCCTCGACCTTCAAGGAAAAGCCCTCAACTGGCTGAAAAAGTACCCTTGCTGCTTTGAAGTGTATCTCCACAATGATGAGCACTACTTTCGGTTAACAAAGAGGATGATGGCTTTGGTTGAAGAGGAAGAAGCTGTCAAAGATATGCAGGAGCCTGCTATTGTCATGCGGTTGGCAAAGTTGCTGATGATGGCTTCAAATCAGAGACTAAATGTCGTAAAACTTGGTGAATTAAGGCGGAATTTTGGTCTCTCGGATGACTACTTGATAAGAATCGTTCCCAAACATTCAGATATGTTCCGAATTGTAAATTATACTGGAAAAAGGAACTCAATGGAAATAGAATTGATCTCTTGGAAACCAGAGCTAGCAATTTCCAGCATAGAATCTTCAGCTTGCAAGCATGGGGTTGAGCCAGCTTTCTCCTGCTCATTGCCAACAACTTGGGTAAACTCATGGGAAAAGTTTCATGAATTTAATGCCTCTCCATATGTTTCACCATATGTAAATCCTGCAGGCTCGGTGCAAGGTACAAAGGAGATGGAAAAGAGGACAGTGGGGTTGATTCATGAGATATTGTCGTTGACATTATGGAAGAAAGCATCAATTATGAAGCTTGGACATTTCAGCAAGGAATTTGGTCTGCCATTGAAGTTGAATGCATTACTGCTTAAGCACCCTGGCATATTCTATGTCTCAAACAAGTATCAGATTTACACTGTTCTTCTTAGAGAAGGGTATAATGGATCAGAACTAATTGAGAAAGATCCACTAGTGGTTGTAAAAGAGAAGTTTGGAGAATTGATGCAGGAGGGACTTCATGAATATAACAAGCGACATCATTTGATGAATTTAGAAAAGAAGAGAATGAAGGGAATGCTTTTGGGTAGATCAGAAAAGAACAAGAGGAAAGATTTTGAACCAGATGATCCTGATGACCAAGGAAACAATCTAGGAGGTTTACTTGAGCCAGAGGAAAGGAAAAGATTCTATCAGTCTCTCTTTGATGATGGTCCTGCATGA 1257 40.33 MLYKVLQKFRYWDPRLSSSYALKFFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPNQAAPVKFLQKKFKTLDLQGKALNWLKKYPCCFEVYLHNDEHYFRLTKRMMALVEEEEAVKDMQEPAIVMRLAKLLMMASNQRLNVVKLGELRRNFGLSDDYLIRIVPKHSDMFRIVNYTGKRNSMEIELISWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEKFHEFNASPYVSPYVNPAGSVQGTKEMEKRTVGLIHEILSLTLWKKASIMKLGHFSKEFGLPLKLNALLLKHPGIFYVSNKYQIYTVLLREGYNGSELIEKDPLVVVKEKFGELMQEGLHEYNKRHHLMNLEKKRMKGMLLGRSEKNKRKDFEPDDPDDQGNNLGGLLEPEERKRFYQSLFDDGPA 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13684520 13685776 + Lsi08G005520.1 Lsi08g00552 668478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00552 418 Pfam Plant organelle RNA recognition domain 35 350 IPR021099 GO:0003723
Lsi08g00552 418 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN 18 406 - -
Lsi08g00552 418 MobiDBLite consensus disorder prediction 376 404 - -
Lsi08g00552 418 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 18 406 IPR045040 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00552 - - - csv:101203802 783.867
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02307 Lsi-Chr2:29668783 Lsi08g00552 Lsi-Chr8:13684520 6.00E-57 dispersed
Lsi04g02237 Lsi-Chr4:29409576 Lsi08g00552 Lsi-Chr8:13684520 1.30E-35 dispersed
Lsi08g00552 Lsi-Chr8:13684520 Lsi09g00587 Lsi-Chr9:6313545 2.36E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1388 . . . . . . . . . Cmo15g00606 . . . . . . Cpe13g00681 Bhi04g01780 . . . . . . Cla08g00221 . Cec08g0008 Cco08g0293 . . Cre08g0194 . . . . . . . Cme03g00320 . . . . . . . . . . . . . . Car15g00555 . . . . . . . . . Cla09g00894 Cam09g0945 Cec09g0948 Cco09g0952 . . Cre09g0914 Lsi08g00552 . Chy03g00307 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005099 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00552 Lsi_Chr08 FPKM 338.224274 368.967438 2.783043 2.815011 5.6269 6.608462 4.988793 1.721568 1.599355 1.445077