Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00554 ATGAAGAGCTTTGTTGGTTATGTAGAGGCCATGGAGGTCCACAAGCCCTATATTGCAATGTTATTTGTTCAATGTGTTTATTCTGGAATGGCTTTATTATCGAAAGCAGCCATTTCTCAAGGCATGAATCCGTCCGTGTTCGTCTTTTATCGTCAAGCTTTTGCTACCGTTGCCATGGCTCCTCTCGCGTTCTTACTCGAAAGAAAAAAGGCAGTTCCTTTATCTTTCAAGTTTCTTTCTAAAGTGTTCTTGGTTTCTCTAATTGGGATTACTTTGAGCTTAAATCTTTATTACGTAGCAATCAGCCACACATCAGCAACATTTGCAGCTGCCACTACCAACACCATCCCTGCCATTACCCTCCTTTTGGCTCTCCTTTTCAGAAAGGTTGAAGGGATGGCCAAGTTGGTGGGAGGAGTGATAGGTTTTTCAGGGGCTTTAGTGTTTGCTTTTGTGAAGGGTCCACCAATGAAATTCATGAATTGGCATCCACAAACAAATAATAATAATAATTCAAATTCATTTCAAGCTTATTCCACATTAGAATGGATTAAGGGTTCATTCACTATGCTTTCAGCCAACATTGCTTGGTCTTTATGGCTTTGTTTCTTTAGTTTGATACAATCAGCTTTGTGGGCTTTGGTAATGGAGAGAAAGCCAAAAGCTTGGAAACTTGGATGGAATCTTCAACTCTTCTCTGTTGCCTATTGTTCTTATAATATGGGTATAATCGTGACCGGAATGACGTATTGGCTACAAATATGGAGTGTGGAGAAGAAAGGGCCAGTTTTCACAGCTATGTTTACACCATTAGCTCTCATCATAACAGCAATCTTCTCAGCATTATTATGGAAGGAAACCCTTCATTGGGGAAGGTCAATTCCTTTATTTTATTATTATTATTACTTTTAA 912 39.04 MKSFVGYVEAMEVHKPYIAMLFVQCVYSGMALLSKAAISQGMNPSVFVFYRQAFATVAMAPLAFLLERKKAVPLSFKFLSKVFLVSLIGITLSLNLYYVAISHTSATFAAATTNTIPAITLLLALLFRKVEGMAKLVGGVIGFSGALVFAFVKGPPMKFMNWHPQTNNNNNSNSFQAYSTLEWIKGSFTMLSANIAWSLWLCFFSLIQSALWALVMERKPKAWKLGWNLQLFSVAYCSYNMGIIVTGMTYWLQIWSVEKKGPVFTAMFTPLALIITAIFSALLWKETLHWGRSIPLFYYYYYF 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13722594 13725594 + Lsi08G005540.1 Lsi08g00554 668480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00554 303 PANTHER WAT1-RELATED PROTEIN 13 201 - -
Lsi08g00554 303 PANTHER WAT1-RELATED PROTEIN 202 292 - -
Lsi08g00554 303 PANTHER WAT1-RELATED PROTEIN 13 201 IPR030184 GO:0016021|GO:0022857
Lsi08g00554 303 Pfam EamA-like transporter family 15 149 IPR000620 GO:0016020|GO:0016021
Lsi08g00554 303 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 151 - -
Lsi08g00554 303 PANTHER WAT1-RELATED PROTEIN 202 292 IPR030184 GO:0016021|GO:0022857
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00554 - - - bhj:120075171 474.552
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00554 Lsi-Chr8:13722594 Lsi10g00701 Lsi-Chr10:9824531 1.01E-60 dispersed
Lsi08g00554 Lsi-Chr8:13722594 Lsi01g01125 Lsi-Chr1:9353369 7.90E-72 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1380 . . . . . . . . Cmo04g02564 . . . . . . . . Bhi04g01775 . . . Hepe02g2137 . Lcy10g1352 Cla08g00712 Cam08g1139 Cec08g0728 Cco08g0836 Clacu08g0847 . Cre08g0648 . . Cone17ag0785 Cone20ag0379 . . . Cme03g00317 . . . Bda13g01413 . . Bma01g00742 . . . . . . Car04g02357 . Cpe01g02117 . . . . . . . . . . . . . . . Lsi08g00554 . Chy03g00510 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000096 8 10 5 6 7 6 9 8 6 9 4 7 7 13 9 7 7 3 5 7 10 11 6 9 16 8 10 19 10 2 244
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00554 Lsi_Chr08 FPKM 12.531857 12.285405 14.218394 14.405747 15.534953 16.077534 17.705717 15.720999 15.227987 14.080746