Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00564 ATGTGCTCGTTAAAAGTGGCGAATCGGCGAGGAATTGGAAGTGACTTGGCACAATTTCCAAGTGGCGGCGCCGGAGATGGCGACGGCGACACTGGTGGTGGCGACGACCATCACAGATTATTATATGGTCAACGTGATGACGGCGATTATTATTCCGCCGTCGGAGAAGCATCCACAATTGTGTCGACGTTAACTAATGTCATGTCCGGGCAGCGGGCTGCCGATTGGAGCTACGGCGGCGGGCAGGGTTTTACGACCGGATTCGTTTCTTCTTCTTCGTCGTCGTCGTCGACGACATCGGCATCGGCATCGGGTTCTTCTCCGTTGTCGACTTATTCCTCGGGGTCGGAACGGAGCTATGTTCCGGCGATGAATTATTGGGTTGGGCAAAAAAGAATGCGTGAAGAAGAAATTAGTATTCAAGCACAGCCTGATTTTGATTCTGTTTCAAGGGGTTTTAGTTTTAGAGGTTTTGATGACCATTTTTCTCATTCTCAAGGACAATCTTCCCCACTTGTTACTACTCGAGTGAAAGATGAAGTTCCGCTACCACACGCGGTGGTTTCAAATCCTGCCCCCGCCGCCGCCGCCTTTGCAGCCTCGCAGATGAGCTCTAACGACGCGGTGGCTGCCGGCGAGAGAAGACGAAGATATAGAGGAGTACGACAGCGGCCGTGGGGGAAATGGGCGGCGGAGATTCGCGATCCGCATAAGGCGGCGAGAGTCTGGCTCGGCACCTTCGACACGGCGGAGGCCGCCGCCCGAGCTTACGACGAAGCAGCCCTCAGATTCAGAGGAAATAGAGCAAAACTCAATTTCCCTGAAAATGTTAGACTAATTCCTCCGCCGCAACACATTCCAGTCGCTGCTTCATCCGCCGGCGCCCAATTTTCTCCGCCGCAGACGGCGGCGTTACAGACTCAAAATTATCGGGATTATATTGAATATTCCAATTTGCTTCAGAACTCCGGCGAACTCCTCGGGCAGCCATCGAGTTTACTGCAGCAAATGTTTTATAATGCTCCTTTAGCTCCATTTCAATCCTCCTCCTCTCCGGTGCCGGCGACTGAGCTGTCGATGTCCTCTGTTTCGAATTCTGTTTTTTTCCCTCCGTCTCTGCAACAGCAGCAAATGGGGGTTTTCCGACAGCCGCCCCAAGATCAAAACCAGGGTGGCTCCGATTACTTTCCGGCTACGCCGTGGAATGATTCCGGCGGCCAATATCCTTCATCGTCGTCCGGTTGA 1245 53.01 MCSLKVANRRGIGSDLAQFPSGGAGDGDGDTGGGDDHHRLLYGQRDDGDYYSAVGEASTIVSTLTNVMSGQRAADWSYGGGQGFTTGFVSSSSSSSSTTSASASGSSPLSTYSSGSERSYVPAMNYWVGQKRMREEEISIQAQPDFDSVSRGFSFRGFDDHFSHSQGQSSPLVTTRVKDEVPLPHAVVSNPAPAAAAFAASQMSSNDAVAAGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVRLIPPPQHIPVAASSAGAQFSPPQTAALQTQNYRDYIEYSNLLQNSGELLGQPSSLLQQMFYNAPLAPFQSSSSPVPATELSMSSVSNSVFFPPSLQQQQMGVFRQPPQDQNQGGSDYFPATPWNDSGGQYPSSSSG 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13859192 13861666 + Lsi08G005640.1 Lsi08g00564 668490

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00564 414 Gene3D AP2/ERF domain 216 276 IPR036955 GO:0003700|GO:0006355
Lsi08g00564 414 MobiDBLite consensus disorder prediction 89 116 - -
Lsi08g00564 414 MobiDBLite consensus disorder prediction 15 41 - -
Lsi08g00564 414 ProSiteProfiles AP2/ERF domain profile. 217 274 IPR001471 GO:0003700|GO:0006355
Lsi08g00564 414 CDD AP2 225 276 IPR001471 GO:0003700|GO:0006355
Lsi08g00564 414 PANTHER DNA-BINDING DOMAIN 54 411 IPR044808 GO:0003700|GO:0009873
Lsi08g00564 414 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 54 411 - -
Lsi08g00564 414 SUPERFAMILY DNA-binding domain 217 275 IPR016177 GO:0003677
Lsi08g00564 414 Pfam AP2 domain 217 266 IPR001471 GO:0003700|GO:0006355
Lsi08g00564 414 MobiDBLite consensus disorder prediction 374 397 - -
Lsi08g00564 414 MobiDBLite consensus disorder prediction 374 414 - -
Lsi08g00564 414 PRINTS Ethylene responsive element binding protein signature 240 256 IPR001471 GO:0003700|GO:0006355
Lsi08g00564 414 PRINTS Ethylene responsive element binding protein signature 218 229 IPR001471 GO:0003700|GO:0006355
Lsi08g00564 414 SMART rav1_2 217 280 IPR001471 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00564 - - - bhj:120069823 619.387
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00246 Lsi-Chr8:5473537 Lsi08g00564 Lsi-Chr8:13859192 2.90E-37 dispersed
Lsi08g00564 Lsi-Chr8:13859192 Lsi01g01113 Lsi-Chr1:9197984 6.23E-36 dispersed
Lsi08g00564 Lsi-Chr8:13859192 Lsi03g00490 Lsi-Chr3:5589479 9.77E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1351 Blo01g01736 Blo12g00779 Bda01g00864 Bda03g00400 Bpe02g00207 Bpe04g00363 Bma04g00381 Bma01g02513 Cmo04g02571 Cmo15g00593 . . . . . . . Bhi04g02173 . . . . . . Cla08g00268 Cam08g0708 Cec08g0269 Cco08g0355 Clacu08g0418 . Cre08g0246 Cone4ag1483 Cone7ag1461 Cone17ag0776 Cone20ag0368 . . . Cme03g00299 Blo17g00139 Blo18g00150 Bda11g00867 Bda13g01423 Bpe02g01101 Bpe14g00434 . Bma02g00158 . . Cmo09g01245 . . Car04g02363 Car09g01066 . . . . . . . . . . . . . . . . Lsi08g00564 . Chy03g00496 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003344 4 0 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25739 PF00847 AP2 8.10E-15 CL0081 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00564 Lsi_Chr08 FPKM 2.294344 2.233372 12.357036 11.08371 12.495498 14.763091 14.576886 4.497962 4.823086 5.851748