Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00567 ATGCGTCGTAGAAGACTAGAAGTTTGTATTTATCAGGAATCAGGAAAATGTGAAATGTGGCTACATTACATTACATGGTTAACTCAATGCCCTGTGCATGTGTTCAATGTGGCAGATGAAGAACGTGGTCTTGGCCGAACCTCGATGACTCCTGATTTAAAATCCCTCCATGGCACTAATCCTATGAGGGAGAAGTTACTGAAACCAGTTGACGAGATGATTTTGGCCTTTGGGGAGATTGGCATGATACACAAGAAGCAGAAGGAGGAGGATATTGCAGTCTGTGAATGCAAGTTTGATGCTAACGATAACGATAGTGCTTGTGGGGAGGGGTGCTTGAATGTACTAACCAGCACTGAGTGCACTCCTGGATATTGTCCCTCTGGTGTTCATTGCAGGAATCAGAGATTTCAGAAATGTGAGTATGCAAGAACAAAGTTGTTCAAAACAGAAGGCCGTGGATGGGGCCTTTTAGCTGATGAGAATATAAAGAATGGACAATTTATTATTGAATATTGTGGGGAAGTTATTTCTTGGAAGGAAGCAAAACGGAGATCCCACACTTATGAAAATCAGGGACTCAAAGATGCTTACATCATCTCGCTCAATGCCTCTGAATCAATTGATGCCACTAGAAAGGGAAGTCTTGCTAGATTTATAAATCATTCATGCTTCCCGAACTGTGAGACGAGGAAGTGGAATGTGTTGGGTGAAATAAGGGTTGGAATATTTGCAAAGCAAGACATTTCCATTGGGACTGAATTGGCATATGATTATAATTTCGAATGGTATGGAGGTGCCAAGGTTCGCTGCCTCTGTGGTGCAAGCAGCTGTTCAGGATTCCTCGGAGCCAAGTCTCGTGGCTTCCTGGAAGATACCTATTTGTGGGAAGATGACGATGATAGGTATTCTGTTGAGAAAATTCCACTCTACGATTCTGCAGAGGATGAGCCTTTCGTTAAGCTCCACACAGCATTGAATAACACATATTCTGAGTTTGAGGGTTATCTGAAAAATGAGAACCCAATGATCATGGACGATAATTTGGGAGCCGAGCAGCAGCTGGGATCCACTGCGTTTATTGATACCTCGAAGAATACAGTTCAATTGCAAAATATAGTTGTAGGAGAAATTAAAAATGAAGCAAAAGAGGAGCCAGAAGATCATCCACAAAATTCGCAGCAGGACTTTTCACATCAGAATGCAATGATATCTCGTATCCGAAGTAATACTGCTTGCCGTAATTATCGCATTGGACCTGGACCCGTGGCCAAAAAACGATCCAGAAATTTATCAAATGGAAGAACGAAAAATTTTACTCTGAAGCAAGTAGATGCAAAATATGTTGCTCGACTGTTAGAGTCGAAGGAAGCACAGGAAGAAGTCTTACAGTATGAGGAAACAAAGAATAAAGCGACCGTGGAACTTGATTCGTTGTACAATGAAATACGACCTGCCATTGAAGAATACGAGAGGGATAGCCAAGACAGTGTAGCTACCAGTGTTGCGGAGAAGTGGATAGAAGCAAGCTGTTTGAAACTGAAGGCAGAATTTGATCTTTATTCTTCTATAGTAAGAAATGTTGCCTGCACTCCTCTAAGGTCAGGTATCTCTACTGAACCTCAACCTCTGGAAGCGGATGACGACAACGACCTGAAATTGTTAACTAATTAG 1674 42.0 MRRRRLEVCIYQESGKCEMWLHYITWLTQCPVHVFNVADEERGLGRTSMTPDLKSLHGTNPMREKLLKPVDEMILAFGEIGMIHKKQKEEDIAVCECKFDANDNDSACGEGCLNVLTSTECTPGYCPSGVHCRNQRFQKCEYARTKLFKTEGRGWGLLADENIKNGQFIIEYCGEVISWKEAKRRSHTYENQGLKDAYIISLNASESIDATRKGSLARFINHSCFPNCETRKWNVLGEIRVGIFAKQDISIGTELAYDYNFEWYGGAKVRCLCGASSCSGFLGAKSRGFLEDTYLWEDDDDRYSVEKIPLYDSAEDEPFVKLHTALNNTYSEFEGYLKNENPMIMDDNLGAEQQLGSTAFIDTSKNTVQLQNIVVGEIKNEAKEEPEDHPQNSQQDFSHQNAMISRIRSNTACRNYRIGPGPVAKKRSRNLSNGRTKNFTLKQVDAKYVARLLESKEAQEEVLQYEETKNKATVELDSLYNEIRPAIEEYERDSQDSVATSVAEKWIEASCLKLKAEFDLYSSIVRNVACTPLRSGISTEPQPLEADDDNDLKLLTN 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13908697 13919646 + Lsi08G005670.1 Lsi08g00567 668493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00567 557 ProSiteProfiles AWS domain profile. 90 141 IPR006560 GO:0005634|GO:0018024
Lsi08g00567 557 SMART set_7 143 266 IPR001214 GO:0005515
Lsi08g00567 557 Pfam AWS domain 103 140 IPR006560 GO:0005634|GO:0018024
Lsi08g00567 557 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 71 494 - -
Lsi08g00567 557 ProSiteProfiles Post-SET domain profile. 267 283 IPR003616 -
Lsi08g00567 557 PANTHER SET DOMAIN PROTEINS 71 494 - -
Lsi08g00567 557 SMART shorttest3 90 142 IPR006560 GO:0005634|GO:0018024
Lsi08g00567 557 SUPERFAMILY SET domain 92 280 IPR046341 -
Lsi08g00567 557 Pfam SET domain 154 260 IPR001214 GO:0005515
Lsi08g00567 557 Coils Coil 455 482 - -
Lsi08g00567 557 Gene3D SET domain 70 293 IPR046341 -
Lsi08g00567 557 ProSiteProfiles SET domain profile. 138 260 IPR001214 GO:0005515
Lsi08g00567 557 SMART PostSET_3 267 283 IPR003616 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00567 - - - cmo:103485603 924.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00567 Lsi-Chr8:13908697 Lsi09g01066 Lsi-Chr9:16415606 7.43E-31 dispersed
Lsi11g01484 Lsi-Chr11:23339271 Lsi08g00567 Lsi-Chr8:13908697 4.12E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1347 . . Bda01g00865 . . . . . . . . . . . . . Cpe13g00692 Bhi04g02533 . . . . . . . . . . . . . . . . . . . . . . Blo18g00148 . . Bpe02g01103 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00567 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010525 1 2 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25740 PF00856 SET 2.60E-18 No_clan Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00567 Lsi_Chr08 FPKM 84.69841 91.283829 1.749331 0.692383 0.0 0.0 0.0 0.566732 0.384232 0.0