Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00568 ATGCAATCCACCTTAGCCCTAATTCTCGCATCCATTGCCAGTTTCTCCGTCGCAACCCTATTCCTTTTCTGCATCTTCTTCGTCTGCCAACACTACAAATCCAAGCATCCAACCACCCGTCAACACCAAGCTCGCCACCGCAATTTAGATCTCTCCTCCATCACCGCCGATGAGAGCGCTTCCTTCGATCCTTCCCTCAGAATCTCCATGGCTGAACTCCGAAACGCTACCAAGAATTTCAGCAACGATTTAATCGTCGGCGATGGCTCCTTCGGCCTCGTTTACAAGGCTCGTCTCTCCTCTGGCGCTACCGTCGCCATCAAGAAACTCAATCCTGATGCCTTCCAAGGTTTTCGAGAATTCCGAGCTGAGATGGAAACTCTCGGAAAACTCCGCCATCGGAACATCGTCAAAATCTTGGGATACTGTGTTTCCGGCTCCGATAGGCTCTTGATCTACGAATTCATCGAGAGAGGAAGTCTCGATAATTGCTTGTACGAGACGTCGACTTCGGCGGAGGCCGATCAGGATTCCGATGGTTATTTGCCCTCACGGCAGCCATTGCCATGGGATACCAGATTGAAGATCATGAGAGGCGTTGCTAATGGGCTTTCCTATTTACATGGGCTTCCTCAGCCCATTATCCATAGAGATATTAAGGCCGGCAATGTCTTATTGGACTCCGAATTCGAGGCCCATATTGCTGATTTTGGGCTGGCCCGTATGATTGAAACCTCTAATTCCCACGTTTCCACTCAGTTCGCCGGAACTATGGGCTACATGCCACCGGAGTACAGGGCCGGGGTGACGGTGGCTACGGTGAAGGCTGACGTGTACAGTTTTGGGATTTTAATGTTTGAGGTTGCTATGGGCCAGAGGCCCAATTTACCTATGGTGTTGGACGGCAGAGAAGTGGGCTTAATAGAATGGGCTAGGATTTTAGTGGCCCAAAATAAACATATGGAAATGGTCGATGCTAACATTTCGAAAGATGAACTAATAGAAGCCAATGTGAAGGAGTATTTTAGGATTGCTTGTTTGTGCACGAGTGAGAGTTCTAGAGAAAGGCCTGCTATGTCTAATGTGGTCGAGTTATTGGATCAAATTTGCGACGTGAAGTTGCGCGACGATGACGAGTATCAAAATAAGCTCGATGAGTAA 1161 48.49 MQSTLALILASIASFSVATLFLFCIFFVCQHYKSKHPTTRQHQARHRNLDLSSITADESASFDPSLRISMAELRNATKNFSNDLIVGDGSFGLVYKARLSSGATVAIKKLNPDAFQGFREFRAEMETLGKLRHRNIVKILGYCVSGSDRLLIYEFIERGSLDNCLYETSTSAEADQDSDGYLPSRQPLPWDTRLKIMRGVANGLSYLHGLPQPIIHRDIKAGNVLLDSEFEAHIADFGLARMIETSNSHVSTQFAGTMGYMPPEYRAGVTVATVKADVYSFGILMFEVAMGQRPNLPMVLDGREVGLIEWARILVAQNKHMEMVDANISKDELIEANVKEYFRIACLCTSESSRERPAMSNVVELLDQICDVKLRDDDEYQNKLDE 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13928215 13929375 + Lsi08G005680.1 Lsi08g00568 668494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00568 386 Gene3D Phosphorylase Kinase; domain 1 38 155 - -
Lsi08g00568 386 ProSitePatterns Protein kinases ATP-binding region signature. 86 109 IPR017441 GO:0005524
Lsi08g00568 386 SMART serkin_6 80 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00568 386 Pfam Protein tyrosine and serine/threonine kinase 85 366 IPR001245 GO:0004672|GO:0006468
Lsi08g00568 386 ProSiteProfiles Protein kinase domain profile. 80 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00568 386 Gene3D Transferase(Phosphotransferase) domain 1 157 385 - -
Lsi08g00568 386 SUPERFAMILY Protein kinase-like (PK-like) 62 366 IPR011009 -
Lsi08g00568 386 PANTHER OS01G0253100 PROTEIN 1 368 IPR045271 GO:0004714|GO:0006468
Lsi08g00568 386 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 1 368 - -
Lsi08g00568 386 CDD STKc_IRAK 86 369 - -
Lsi08g00568 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00568 - - - cmo:103485602 703.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00568 Lsi-Chr8:13928215 Lsi05g01245 Lsi-Chr5:20257695 5.97E-73 dispersed
Lsi08g00568 Lsi-Chr8:13928215 Lsi10g01538 Lsi-Chr10:19777590 5.34E-72 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1346 . . . . Bpe02g00205 . . Bma01g02515 . Cmo15g00590 . . . . . . Cpe13g00693 Bhi04g01757 . . . . . Lcy10g1364 . . . . . . . . . . . . . . Cme03g00296 . . . . . . . . . . . . . Car04g02364 Car15g00542 Cpe01g02126 . . . . . . . . . . . . . . . Lsi08g00568 . Chy03g00493 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010752 0 1 0 1 1 0 2 0 0 1 1 1 2 1 0 1 0 0 2 0 1 1 1 0 1 1 1 1 0 1 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83833 PF07714 PK_Tyr_Ser-Thr 9.80E-46 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00568 Lsi_Chr08 FPKM 20.63863 23.443039 34.549755 37.306053 34.982891 25.582422 34.224812 9.086532 8.91284 8.863571