Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00569 ATGTCGGGGGCTTGTTCAATCCCCTTTGCCAATATCAAAATTCCTTCCACTTCCTCATCGCCGGCCACCGCTTCTCCCTCCGCCTCCGCCTCCTCTTCCGCTTCTTCATCCTCCCCTCACACTTCCATTCGATTCTCCTCTTCCAAGCCTTTCGTCTTCACTATCAGGAGCTCTCAGACCGAAGGCCCTCTTCGGAGACCGGCGGCTCCTTCTCTTAGAGAGCCGTCGCCCCCTTCGCCGCCTTCGCCGACGCCTCCTCTCAAACCTACTCCTCCATCGCAATCGCCTCCGTCGTCGGCGTCTCCTGTTGCGAAACAGGATAATGTGATCACATTGGAGTTTCAGAGGCAGAGAGCTAAGGAGCTTCAGGAGTATTTTAAGCAGAAGAAGCTTGATGAAGCTGATCAGGGACCGTTCTTTGGCTTCATCGGGAAGAATGAAATTTCCAATGGGAGGTGGGCTATGTTTGGTTTTGCTGTTGGATTACTGACAGAATATGCAACTGGTTCAAACTTTGTTGATCAAGTAAAGATCCTTCTCTCAAATTTTGGGATAGTAGATCTCGAATGA 570 50.88 MSGACSIPFANIKIPSTSSSPATASPSASASSSASSSSPHTSIRFSSSKPFVFTIRSSQTEGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPSQSPPSSASPVAKQDNVITLEFQRQRAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLE 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13931047 13933730 - Lsi08G005690.1 Lsi08g00569 668495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00569 189 MobiDBLite consensus disorder prediction 11 61 - -
Lsi08g00569 189 SUPERFAMILY Chlorophyll a-b binding protein 135 178 - -
Lsi08g00569 189 MobiDBLite consensus disorder prediction 70 98 - -
Lsi08g00569 189 MobiDBLite consensus disorder prediction 1 106 - -
Lsi08g00569 189 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 1 188 - -
Lsi08g00569 189 PANTHER MYB-LIKE PROTEIN U 1 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00569 - - - cmo:103485601 228.794
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1342 Blo01g01739 . . Bda03g00402 Bpe02g00203 Bpe04g00366 Bma04g00383 . Cmo04g02572 Cmo15g00589 . . . . Sed11g1371 . Cpe13g00694 Bhi04g01756 Tan11g1116 Cmetu03g0534 . Hepe02g2808 . Lcy10g1365 . . . . . . . Cone4ag1473 Cone7ag1467 . . . . . . . . Bda11g00864 . . . . . . . . . . Car04g02365 Car15g00541 Cpe01g02127 . . . . . . . . . . . . . . . Lsi08g00569 . Chy03g00492 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006504 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00569 Lsi_Chr08 FPKM 7.623534 8.925582 1.884653 2.17054 1.042953 0.890573 0.61366 0.354098 0.298061 0.0