Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00571 ATGCTGTTTGGATTTACAGTGTTTATCGTTACTTCTGCTGTAAACTATGGAATTTGTGTAGATGTGATCCAATTTTCATGGAAGCTGAAGGATAAAGGTTTTCGCGGAAGTCGTCGTGTAAGGAATATTTTTTTGAAAATGGCTCCATCTAGCAAAGCTGACAAGAAAGCGGCTGTAGATGCAGCCGCATGGATGTTTAACGTTGTAACTTCTGTTGGAATTATAATCGTGAATAAGGCTCTCATGGCTACCTATGGCTTCAGCTTCGCCACAACTTTAACAGGTTTGCATTTTGCGACGACCACCCTGATGACTGTCATTCTAAGGTGGCTTGGTTATATTCAAGCCTCCCATCTTCCTCTACCAGAGCTTCTAAAATTTGTACTGTTTGCCAACTTTTCTATTGTTGGAATGAATGTTAGCCTGATGTGGAATTCTGTGGGATTTTATCAGATTGCAAAGCTAAGCATGATTCCTGTCTCTTGCTTGTTGGAAGTGGTCTTGGACAAGATTCGGTACTCCAGAGATACGAAATTGAGCATTGCAGTTGTTCTCTTGGGTGTTGGAGTATGTACTGTAACCGATGTCAGTGTTAATACCAGAGGCTTTGTTGCCGCCATTATCGCCGTATGGAGCACTTCTCTGCAGCAATACTATGTGCATTTCCTCCAACGGAAGTATTCGCTGAGTTCCTTCAACCTGTTAGGACACACGGCTCCAGCGCAGGCCGGCTCTCTTCTATTGATCGGACCCTTTCTCGACTACTGGTTGACGAGCAAAAGAGTGGACCAATATAACTACAATTTAGCCTCTACCATTTTCATAATTCTCTCTTGCTCCATTGCTGTGGGAACCAATCTTAGCCAATTTATCTGCATAGGCAGATTCACAGCTGTGTCATTTCAAGTTCTTGGCCACATGAAAACAATCCTTGTCTTGATCATGGGATTCTTCTTCTTTGGGAAGGAGGGGCTTAACATGCAGGTAGTTTTGGGAATGATCATAGCTGTCATCGGGATGATATGGTACGGTAATGCCTCGTCGAAACCGGGTGGAAAAGAACGTCGGAGCCACACGCTCCCGACAGCTAGACAACAAAAACATGGTGGTTTAACAGATTCTACTGAACATGATGGGAAAGTCTAA 1146 43.54 MLFGFTVFIVTSAVNYGICVDVIQFSWKLKDKGFRGSRRVRNIFLKMAPSSKADKKAAVDAAAWMFNVVTSVGIIIVNKALMATYGFSFATTLTGLHFATTTLMTVILRWLGYIQASHLPLPELLKFVLFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCLLEVVLDKIRYSRDTKLSIAVVLLGVGVCTVTDVSVNTRGFVAAIIAVWSTSLQQYYVHFLQRKYSLSSFNLLGHTAPAQAGSLLLIGPFLDYWLTSKRVDQYNYNLASTIFIILSCSIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFFFFGKEGLNMQVVLGMIIAVIGMIWYGNASSKPGGKERRSHTLPTARQQKHGGLTDSTEHDGKV 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13962832 13966554 + Lsi08G005710.1 Lsi08g00571 668497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00571 381 PANTHER SOLUTE CARRIER FAMILY 35 53 360 - -
Lsi08g00571 381 MobiDBLite consensus disorder prediction 348 381 - -
Lsi08g00571 381 Pfam Triose-phosphate Transporter family 69 343 IPR004853 -
Lsi08g00571 381 PANTHER - 53 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00571 - - - csv:101221215 634.024
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01105 Lsi-Chr1:9138004 Lsi08g00571 Lsi-Chr8:13962832 0 dispersed
Lsi08g00571 Lsi-Chr8:13962832 Lsi10g00023 Lsi-Chr10:403291 1.29E-101 dispersed
Lsi08g00571 Lsi-Chr8:13962832 Lsi09g00353 Lsi-Chr9:3684551 3.41E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1339 Blo01g01742 Blo12g00774 . Bda03g00404 Bpe02g00201 Bpe04g00368 Bma04g00384 Bma01g02520 Cmo04g02574 Cmo15g00586 . . . . . . Cpe13g00696 Bhi04g01752 . . . Hepe02g2810 . Lcy10g1367 Cla08g00750 Cam08g1177 Cec08g0767 Cco08g0875 Clacu08g0883 . Cre08g0685 Cone4ag1470 Cone7ag1470 . . . . . Cme03g01049 . . Bda11g00862 Bda01g01473 . . Bma01g00781 . . . . . . Car04g02367 Car15g00539 Cpe01g02129 . . . . . . . . . . . . . . . Lsi08g00571 . Chy03g00491 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001292 1 4 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 8 2 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00571 Lsi_Chr08 FPKM 0.0 0.0 0.169792 0.0 14.506594 13.033159 14.360472 0.0 0.0 0.0