Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00573 ATGGGCCATTTGGCGCGCCGAGTCTCCACTCTCCAAAAGCAGCCAGCCAGAATGAGAGATTCACCTGATGCTTTGGTGCACGAGGTGAAAGACGCTAAAAATAAGGCCATCAAGTTTTCTGCAGCACTTAATGTTGGAGAAAATGAGGAGTTTGATTTTGTACGTACCTTATATGAAGGTGCTATAGCTGGAAGTGCTGCTAGCCTCGTTATAGAAGCTGTTCTATATCCAATTGATACAATAAAAACTCGTCTACAGGCTGTTCACGGAGGAGGAAAAGTTGTACTGAAGGGTCTTTATTCTGGATTGGCTGGAAATCTTGTTGGGATGTTACCTGCCACTGCCGTTTTTGTTGGTGTGTATGAGCCTACCAAGCAGAAATTGCTCAAGTCTCTCCCTGAAAACCTCAATGCTTTAGCCCATCTGTTTACAATACTCGTTGAGTCTGGCAGATGTCTTCCCTTCGGCTACTTTTGCTTTTTTGTTGAAAAAGACCATCAGTTGCATTTCGGGTGTTCAAGCTACATACAGACTGCAGGTGTCGTAGGAGGAGTGGCTTCATCGATCATCCGTGTACCAACAGAGGTAGTTAACTTTAGCTGCTCTATTACAATATTCTGTCCTTGCTTGCTGAGCTCGTTATTTGTAGTTAAGCAAAGGATGCAGACTAGCCACTTTGCGTCAGCATCGAATGCTGTCCACGTTATTGTTTCAAGGGAAGGTTTTAAAGGTCTTTATGCGTATACTCACTTTGTTACGTCCTTATCTGTCACTATTCAATATTTATCTTGCCAATTTATTGTGAAAGAGAATGGTTATGGATCTTTCTTACTACGAGATCTGCCATTTGATGCCATTCAGTTCTGCATTTACGAACAACTTAGGATAGGGTACAAGCTAGCGGCGCAAAGAGATCCAAATGACCCTGAGAATGCTATAATTGGTGCCTTTTCTGGTGCCGTTACTGGGGCTATAACCACTCCTTTTGATGTGATCAAAACTCGATTAATGGTCCAGGGATCAAATAGCCAATATCAAGGTATTCGTGATTGTTGTAGGACTATAATGAAGGAAGAAGGAGCACGCGCCTTTTTAAAGGGCATAGGGCCAAGGGTATTATGGATAGGGTTAGGAGGCGCTATATTCTTTGGTGTTCTTGAAAAAACAAAGCAGATGCTTGCTAATAAGAGGCATCCGGTGCCTGAGAAACCCGTCGAGTCGCGATGA 1227 43.28 MGHLARRVSTLQKQPARMRDSPDALVHEVKDAKNKAIKFSAALNVGENEEFDFVRTLYEGAIAGSAASLVIEAVLYPIDTIKTRLQAVHGGGKVVLKGLYSGLAGNLVGMLPATAVFVGVYEPTKQKLLKSLPENLNALAHLFTILVESGRCLPFGYFCFFVEKDHQLHFGCSSYIQTAGVVGGVASSIIRVPTEVVNFSCSITIFCPCLLSSLFVVKQRMQTSHFASASNAVHVIVSREGFKGLYAYTHFVTSLSVTIQYLSCQFIVKENGYGSFLLRDLPFDAIQFCIYEQLRIGYKLAAQRDPNDPENAIIGAFSGAVTGAITTPFDVIKTRLMVQGSNSQYQGIRDCCRTIMKEEGARAFLKGIGPRVLWIGLGGAIFFGVLEKTKQMLANKRHPVPEKPVESR 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14006186 14014315 + Lsi08G005730.1 Lsi08g00573 668499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00573 408 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 271 400 - -
Lsi08g00573 408 PANTHER S-ADENOSYLMETHIONINE CARRIER 1, CHLOROPLASTIC/MITOCHONDRIAL 19 143 - -
Lsi08g00573 408 SUPERFAMILY Mitochondrial carrier 57 387 IPR023395 -
Lsi08g00573 408 Pfam Mitochondrial carrier protein 310 396 IPR018108 -
Lsi08g00573 408 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 19 143 - -
Lsi08g00573 408 ProSiteProfiles Solute carrier (Solcar) repeat profile. 55 127 IPR018108 -
Lsi08g00573 408 Gene3D Mitochondrial carrier domain 200 406 IPR023395 -
Lsi08g00573 408 Gene3D Mitochondrial carrier domain 29 199 IPR023395 -
Lsi08g00573 408 PANTHER S-ADENOSYLMETHIONINE CARRIER 1, CHLOROPLASTIC/MITOCHONDRIAL 178 252 - -
Lsi08g00573 408 ProSiteProfiles Solute carrier (Solcar) repeat profile. 310 392 IPR018108 -
Lsi08g00573 408 PANTHER S-ADENOSYLMETHIONINE CARRIER 1, CHLOROPLASTIC/MITOCHONDRIAL 271 400 - -
Lsi08g00573 408 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 178 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00573 K15111 SLC25A26; solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26 - csv:101220750 523.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00573 Lsi-Chr8:14006186 Lsi10g00675 Lsi-Chr10:9364119 9.51E-122 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1331 . . . . . . . . Cmo04g02578 Cmo15g00582 . . . . Sed05g0790 . Cpe13g00699 Bhi04g01747 Tan11g1101 Cmetu03g1735 . Hepe02g2813 . Lcy10g1370 Cla08g00747 Cam08g1174 Cec08g0764 Cco08g0871 Clacu08g0880 . Cre08g0682 . . . Cone20ag0664 . . . Cme03g01052 . . . . . . . . . . . . . Car04g02371 Car15g00536 Cpe01g02132 . . . . . . . . . . . . . . . Lsi08g00573 . Chy03g00489 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002717 3 2 1 1 1 1 3 1 1 2 1 1 3 2 2 2 2 2 3 1 2 2 2 2 2 2 2 3 2 2 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00573 Lsi_Chr08 FPKM 0.050539 0.0 0.0 0.0 0.040225 0.151315 0.236027 0.0 0.0 0.0