Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00575 ATGAAGTTTCTCTTATCGTTCTTACTTCTCTCTGTTACTACTCCAGCTTTTTATCACGTTGCACTGGCTCGAGGCGCCTCGAATCGCTTCATTTCGTCAGTGGACTTCGATAATCGTTCATATGGCGGTTCTGCTAGATTTTTACTCGAGGATAATAAATCTCAAGGAAGCATCATGCAAGGTTATATGACCAATAAAGAGCTTGAGGAGGCGATTAAAGCTTTCGGCCAGGAAGAAGCTGAACCTGCATTTAAGTACATAGGAAATGTACATGGAGATGAACCTGTTGGCAGGGAGCTTCTTTTGCAATTTGCTAACTGGATATGTGATAATTACCTGAAGGATCCGTTGGCTACACTGATTGTGGAGAATGTTCATCTTCATATACTTCCATCCATGAATCCTGATGGGTTTTCTCTTAAGAGACGCAATAATGCGAACAATGTTGATCTAAACAGAGATTTCCCCGACCAGGGTGCACTTGTTGCAAATTACCCATGGGATGGCACAGCAGATAAAAGGAAAGATTATTATGCATGTCCAGATGATGAAACATTCCGATTCATGGCCGGTGTCTATAGTCGCTCACATCATAACATGTCTTTTAGCCAAGAATTTCAAGGAGGAATTACGAATGGAGCTCAATGGTATCCCATATATGGTGGCATGCAAGACTGGAACTATCTACATGGTGGCTGTTTTGAGTTGACTTTAGAGATTACAGACAACAAATGGCCTCCTGCTAATGAGCTTGCTACCATTTTTGAGTATAACAAGTTGAGTATGCTAAAGCTTGTTGCAAGTCTTGTTCAGACAGGAATACATGGAAGAATTTTTTCATCAGACAGTGGAAGGCCGTTGCCTGCAACCATTACACTCGAGGGAATAGATTATTCGGTTAAAGCTGGTCAAAAGTTTGCCGACTACCACCGGTTAGCCGCACCAAGACAGAAATATGAAGTAACTGCATCGATGCTCGGGTACAAGTCGAAGAATACGAGCATCTGGTTGGAAGAGGGAGCGATGTCTGTGGACTTTGTTCTTGATCCAGACTCAACAACCAAAGGAAAACTAATACAAAACTGTGATTGCTACTGTGGCAATAGGCTCGACTTTGTGGGCTATATTTGGGGACACTACTTTGAGGCCTATATTTTCTTGGCGGTTGTTTTAGTATTTATTTGCTTTTTATTTCAGAAGAGGATGAAATCTAGACTTTCCAAGCAAAGATTAGTTGCATTACCTAAGAGGACTGTGGTCTGA 1263 41.73 MKFLLSFLLLSVTTPAFYHVALARGASNRFISSVDFDNRSYGGSARFLLEDNKSQGSIMQGYMTNKELEEAIKAFGQEEAEPAFKYIGNVHGDEPVGRELLLQFANWICDNYLKDPLATLIVENVHLHILPSMNPDGFSLKRRNNANNVDLNRDFPDQGALVANYPWDGTADKRKDYYACPDDETFRFMAGVYSRSHHNMSFSQEFQGGITNGAQWYPIYGGMQDWNYLHGGCFELTLEITDNKWPPANELATIFEYNKLSMLKLVASLVQTGIHGRIFSSDSGRPLPATITLEGIDYSVKAGQKFADYHRLAAPRQKYEVTASMLGYKSKNTSIWLEEGAMSVDFVLDPDSTTKGKLIQNCDCYCGNRLDFVGYIWGHYFEAYIFLAVVLVFICFLFQKRMKSRLSKQRLVALPKRTVV 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14017264 14027577 - Lsi08G005750.1 Lsi08g00575 668501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00575 420 CDD Peptidase_M14NE-CP-C_like 273 348 - -
Lsi08g00575 420 PANTHER CARBOXYPEPTIDASE D 78 158 IPR015567 GO:0004181|GO:0006518|GO:0008270
Lsi08g00575 420 PANTHER CARBOXYPEPTIDASE D 159 348 IPR015567 GO:0004181|GO:0006518|GO:0008270
Lsi08g00575 420 SUPERFAMILY Carboxypeptidase regulatory domain-like 273 358 IPR008969 -
Lsi08g00575 420 Pfam Zinc carboxypeptidase 160 257 IPR000834 GO:0004181|GO:0006508|GO:0008270
Lsi08g00575 420 Pfam Zinc carboxypeptidase 76 158 IPR000834 GO:0004181|GO:0006508|GO:0008270
Lsi08g00575 420 SMART zn_carb 38 360 IPR000834 GO:0004181|GO:0006508|GO:0008270
Lsi08g00575 420 Gene3D Zn peptidases 64 269 - -
Lsi08g00575 420 Gene3D - 272 351 - -
Lsi08g00575 420 SUPERFAMILY Zn-dependent exopeptidases 60 267 - -
Lsi08g00575 420 ProSitePatterns Zinc carboxypeptidases, zinc-binding region 1 signature. 82 104 IPR000834 GO:0004181|GO:0006508|GO:0008270
Lsi08g00575 420 PANTHER PROTEASE M14 CARBOXYPEPTIDASE 78 158 - -
Lsi08g00575 420 PANTHER PROTEASE M14 CARBOXYPEPTIDASE 159 348 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00575 - - K07752 csv:101220508 755.362
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1320 . . . . . . . . Cmo04g02579 . . . . . Sed11g1378 . . Bhi04g01745 Tan11g1099 . . Hepe02g2814 . Lcy10g1371 Cla08g00746 Cam08g1173 Cec08g0763 Cco08g0870 Clacu08g0879 . Cre08g0681 . . . Cone20ag0364 . . . Cme03g01053 Blo17g00133 . . Bda13g01417 . . . Bma02g00153 . . . . . Car04g02372 . Cpe01g02133 . . . . . . . . . . . . . . . Lsi08g00575 . Chy03g00488 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010573 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00575 Lsi_Chr08 FPKM 18.121412 18.078079 7.736352 8.034755 22.660353 24.113285 19.66761 3.53027 4.545182 2.258519