Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00578 ATGAGGCACAATTCCAAGAATCAACCTCAGCTTTTCTGGCCCAGAGTGGTCTTGCGCAAATGGCTCAATATCAGCGCTAAAGAGTCGGATTACAGTGCCGATACCGAAGATGATGAAGATGTGAATTCTTCCGATTCCGAGATTGAAGGTGACTCTTCTAAACCCTTGAAATTGATTAAGCATTTTAGAGTTATCGGATACTTGAAATCCACGTTTAGCGTGAATGTTAAGGTAGCGAAAATGCAATGTATTTTTGGTTTGGTGGTTTCTGTGCTTGAATGTCGTGTTAGGGGAAGAGAATCACGCTTTAAGGTAGACAACAGAGATGAACCACTGGTTGATGCTAATGTTGAAGCTATTTCTACAGTCCCATGCTCTCGTTCTCTTTATCTAGGATGCATAGCGTTATGCTTCTCTCCTAAGATGAGGGTAGCTTTCAGCTGCCATGTGCTGCCGAGGTTGAGAAGAAGAAATTCAGAAACATTTAGGACGCAATATATCACCACAAAAGAACTCAGAATATGTGTTGGGACTTGGAATGTTGGAGGAAAACTACCTCCTGAAGATCTAGATATTGATGGCTGGATAGATACCAATGAGCCGGCTGATATCTATGTCCTTGGTCTCCAGGAGATTGTCCCATTGAATGCTGGAAATATATTTGGTGCTGAAGACAGTCGCCCAGTTGCAAGGTGGGAAGATATTATCCGTGAAACATTGAATAGGGTTAGACCTGCTACAACCAAGATTAAGTGCTTTAGTGATCCACCATCCCCATCAAAGTTTAAACCATCTGACGACATCCCAGATTTAGAGGAGGAGATTCTGCAGGAAAGTGATAGTGACATTGGTGAGGAAGTGCATCCCTGTGATGAAGAATTCTTTGGCAAGGAAAATGTCGATGGACTAGTAGGTGATACAAATCTAAGCTTGAAGTTCCCAGTTTCAGAACTTTCTGCAAATACCAAATCAGGGAGACCTGTACAACAGGATTTAGTGAGGCAATATTCTTCTCCAAAGAGATTGGATCGGTTAAATTGCTTACGAACTGAAGACAGCACAGAGAATGATGAGGCTGTCTTGCTACAGAACAGAAGATTAACTAAAATGCTTAGTGGGTCAGAAAGGATTGGTCTGTGTTGGCCTGAGCCTCCACTACACTTACTACCCCACAATGTTTTAGAGAGACCTAACTCATTTAAATCAATAAGATCGTTTAAAACATCCAAGTCCTTTGTGGCATATAATTCTTTCAAGTCTACCATGAATGAAATGCCATCAGGGGTTGCTTTGCTTGGAGAAATTGATCTCGAGTCTCTCCTAAAACGAAAGAGAAGATCCTCATACGTTAGAATAGTAAGTAAACAAATGGTTGGTATTTTCCTCACAATATGGGTTCGTAGGAGTTTGCGAAGGCACATTCAGAATGTAAATGTATCTACTGTTGGTGTTGGTGTAATGGGCTACATTGGCAACAAGGTTCGCTCCCTTTTTCATTGTTTAATGTTTGCTAGTCTATGGATCCTGTTGTATATGATGGTGCTGGGATCCATATCTGTCAGCATGTCCATATATCAGACCCTATTTTGCTTTATATGCACTCACCTGACTTCAGGTGAAAAGGAGGGAGATGAACTTAAAAGAAACGCTGACGTGAGTGAAATACATCGAAGAACTCAATTCCATCCACTTAATGGTGTTGGGTTTCCTAAAATAATCCACGATCATGAGCGGATAATCTGGTTTGGTGATTTAAATTACCGCATCAACTTGTCTTATGAGAAAACAAGAGAGCTTATCTCGAGAAAAGAGTGGTCCAAATTGGCCGAGAGTGATCAGTTATTGCGGGAGCTTAAGAAGGGTCGTGCATTTGATGGATGGACTGAGGGAAACCTAAGTTTTGCTCCAACCTATAAATACGAGAACAATTCAGAAAAGTATTACGGCGAAGATCCAAAAGTTGGAAGGCGTACTCCAGCATGGTGTGACCGTATACTTTCATACGGCAAGGGATTGAAATTGTGCAGTTACAGGAGGACTGAAATTAAATTTTCTGATCATAGACCAGTGACAGCCACCTACGTGGCCGAGGTTGAGGTTTTCTGTCCCCGTAAGCTACAGCGAGCTCTAACATTTACAGACGCAGAGATCGAAAATGAGGAATTAGCAATGGATGTATACTGA 2184 41.62 MRHNSKNQPQLFWPRVVLRKWLNISAKESDYSADTEDDEDVNSSDSEIEGDSSKPLKLIKHFRVIGYLKSTFSVNVKVAKMQCIFGLVVSVLECRVRGRESRFKVDNRDEPLVDANVEAISTVPCSRSLYLGCIALCFSPKMRVAFSCHVLPRLRRRNSETFRTQYITTKELRICVGTWNVGGKLPPEDLDIDGWIDTNEPADIYVLGLQEIVPLNAGNIFGAEDSRPVARWEDIIRETLNRVRPATTKIKCFSDPPSPSKFKPSDDIPDLEEEILQESDSDIGEEVHPCDEEFFGKENVDGLVGDTNLSLKFPVSELSANTKSGRPVQQDLVRQYSSPKRLDRLNCLRTEDSTENDEAVLLQNRRLTKMLSGSERIGLCWPEPPLHLLPHNVLERPNSFKSIRSFKTSKSFVAYNSFKSTMNEMPSGVALLGEIDLESLLKRKRRSSYVRIVSKQMVGIFLTIWVRRSLRRHIQNVNVSTVGVGVMGYIGNKVRSLFHCLMFASLWILLYMMVLGSISVSMSIYQTLFCFICTHLTSGEKEGDELKRNADVSEIHRRTQFHPLNGVGFPKIIHDHERIIWFGDLNYRINLSYEKTRELISRKEWSKLAESDQLLRELKKGRAFDGWTEGNLSFAPTYKYENNSEKYYGEDPKVGRRTPAWCDRILSYGKGLKLCSYRRTEIKFSDHRPVTATYVAEVEVFCPRKLQRALTFTDAEIENEELAMDVY 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14044178 14067777 - Lsi08G005780.1 Lsi08g00578 668504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00578 727 Gene3D Endonuclease/exonuclease/phosphatase 152 255 IPR036691 -
Lsi08g00578 727 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 146 723 IPR045849 GO:0004445|GO:0046855
Lsi08g00578 727 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 3 146 723 - -
Lsi08g00578 727 Gene3D Endonuclease/exonuclease/phosphatase 402 725 IPR036691 -
Lsi08g00578 727 SUPERFAMILY DNase I-like 161 712 IPR036691 -
Lsi08g00578 727 SMART i5p_5 382 702 IPR000300 GO:0016791|GO:0046856
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00578 - - - bhj:120075315 1158.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01621 Lsi-Chr5:23857103 Lsi08g00578 Lsi-Chr8:14044178 2.85E-24 dispersed
Lsi07g01226 Lsi-Chr7:17886579 Lsi08g00578 Lsi-Chr8:14044178 4.08E-146 dispersed
Lsi08g00578 Lsi-Chr8:14044178 Lsi08g00617 Lsi-Chr8:14491930 4.05E-17 dispersed
Lsi08g00578 Lsi-Chr8:14044178 Lsi09g01303 Lsi-Chr9:20888140 9.70E-91 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1334 . . . . . . . . Cmo04g02580 Cmo15g00580 . . . . . . Cpe13g00701 Bhi04g01737 . . . . . . Cla08g00742 Cam08g1169 Cec08g0759 Cco08g0867 Clacu08g0876 . Cre08g0677 . . Cone17ag0768 Cone20ag0358 . . . . . . . Bda13g01416 . . Bma01g01429 . . . . . . Car04g02373 Car15g00534 Cpe01g02134 . . . . . . . . . . . . . . . Lsi08g00578 . Chy03g00484 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003115 1 10 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00578 Lsi_Chr08 FPKM 16.329836 13.709984 39.496326 43.350552 13.223274 12.447511 12.015864 37.09573 34.784588 31.362761