Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00585 ATGGCAGTTCACTCTCACATTGAGAGAGTGCTCTGGAACCAGGACCAGATTTCGGCTCGAGTCTCAGACCTCGCTTCCCAAATCTCCGCCGCCTTCGCCGGAACCTCTTCGCCGCCAGTCCTAGTTGGCGTCGCCACCGGAGCCTTCATCTTCCTGGCCGACTTGGTCCGTCGCATCAATCTTCCAATTGCTGTTGACTTCGTTCGTGTCGAGTCTTACGGTTTCGGTACTCAGTCTAATGGCGCTCCTAGAATCTCATCGGACTTGAAGGTCGATGTTAAGAACAAGCATGTAATTCTGGAAATTTTGCATGTTGAAGATATTGTAGATACTGGAAATACTTTATCATGTCTCATTGCTCACATGGAGGCAAAAGGAGCATCATCTATATCAGTATGCACTTTTCTTGATAAACCAACGAGACGAAAGGTTAATTTTCAGCTAGTAGGCGAAGGAAAGTTCTACCGCGGGTTTGAATGTCCAGATTATTTTGTGGTGGGCTATGGAATGGACTTCGCGGAGCTGTACAGAAATTTACCATATGTTGGCGTTTTGAAGCCTGAATGTTACCAGTGA 576 46.88 MAVHSHIERVLWNQDQISARVSDLASQISAAFAGTSSPPVLVGVATGAFIFLADLVRRINLPIAVDFVRVESYGFGTQSNGAPRISSDLKVDVKNKHVILEILHVEDIVDTGNTLSCLIAHMEAKGASSISVCTFLDKPTRRKVNFQLVGEGKFYRGFECPDYFVVGYGMDFAELYRNLPYVGVLKPECYQ 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14125333 14128000 - Lsi08G005850.1 Lsi08g00585 668511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00585 191 Gene3D - 1 191 IPR029057 -
Lsi08g00585 191 Pfam Phosphoribosyl transferase domain 15 172 IPR000836 -
Lsi08g00585 191 SUPERFAMILY PRTase-like 3 190 IPR029057 -
Lsi08g00585 191 PANTHER HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE 3 191 - -
Lsi08g00585 191 PANTHER HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE 3 191 - -
Lsi08g00585 191 TIGRFAM HGPRTase: hypoxanthine phosphoribosyltransferase 10 186 IPR005904 GO:0004422|GO:0006166
Lsi08g00585 191 CDD PRTases_typeI 24 151 IPR000836 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00585 K00760 hprT, hpt, HPRT1; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] - csv:101219321 342.813
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01213 . 33 168 PRT Gene Family AT1G80050 80.9 7.8e-57 216.9
Lsi08g01520 . 107 257 PRT Gene Family AT1G80050 68.9 1.1e-53 206.5
Lsi07g01320 . 30 165 PRT Gene Family AT1G80050 73.2 2.4e-53 205.3
Lsi09g00406 . 30 154 PRT Gene Family AT1G80050 70.6 6.0e-49 190.7
Lsi08g01213 . 1 148 PRT Gene Family AT5G11160 81.1 4.1e-64 241.1
Lsi08g01520 . 85 223 PRT Gene Family AT5G11160 73.4 2.0e-55 212.2
Lsi09g00406 . 8 134 PRT Gene Family AT5G11160 74.0 2.0e-50 195.7
Lsi07g01320 . 8 139 PRT Gene Family AT5G11160 68.1 2.6e-47 185.3
Lsi08g01520 . 78 260 PRT Gene Family AT1G27450 80.9 2.9e-79 291.6
Lsi08g01213 . 11 179 PRT Gene Family AT1G27450 70.6 8.9e-65 243.4
Lsi07g01320 . 7 166 PRT Gene Family AT1G27450 72.9 7.6e-64 240.4
Lsi09g00406 . 7 157 PRT Gene Family AT1G27450 70.4 4.6e-61 231.1
Lsi10g00425 . 71 555 PRT Gene Family AT2G16570 85.2 1.6e-242 835.5
Lsi10g00425 . 71 555 PRT Gene Family AT4G34740 86.2 1.5e-243 839.0
Lsi10g00425 . 28 528 PRT Gene Family AT4G38880 70.9 9.5e-200 693.3
Lsi08g01520 . 78 260 PRT Gene Family AT1G27450 80.9 2.9e-79 291.6
Lsi08g01213 . 11 179 PRT Gene Family AT1G27450 70.6 8.9e-65 243.4
Lsi07g01320 . 7 166 PRT Gene Family AT1G27450 72.9 7.6e-64 240.4
Lsi09g00406 . 7 157 PRT Gene Family AT1G27450 70.4 4.6e-61 231.1
Lsi08g01213 . 33 168 PRT Gene Family AT1G80050 80.9 7.8e-57 216.9
Lsi08g01520 . 107 257 PRT Gene Family AT1G80050 68.9 1.1e-53 206.5
Lsi07g01320 . 30 165 PRT Gene Family AT1G80050 73.2 2.4e-53 205.3
Lsi09g00406 . 30 154 PRT Gene Family AT1G80050 70.6 6.0e-49 190.7
Lsi09g00406 . 6 104 PRT Gene Family AT4G22570 82.8 5.0e-44 173.7
Lsi07g01320 . 1 95 PRT Gene Family AT4G22570 87.5 1.1e-43 172.6
Lsi08g01520 . 83 174 PRT Gene Family AT4G22570 82.6 4.4e-40 160.6
Lsi08g01213 . 11 100 PRT Gene Family AT4G22570 78.9 2.0e-37 151.8
Lsi09g00406 . 1 96 PRT Gene Family AT4G12440 84.4 8.1e-41 162.9
Lsi07g01320 . 1 95 PRT Gene Family AT4G12440 85.3 2.4e-40 161.4
Lsi08g01520 . 78 173 PRT Gene Family AT4G12440 79.2 3.8e-38 154.1
Lsi08g01213 . 4 99 PRT Gene Family AT4G12440 78.1 3.2e-37 151.0
Lsi08g01213 . 1 148 PRT Gene Family AT5G11160 81.1 4.1e-64 241.1
Lsi08g01520 . 85 223 PRT Gene Family AT5G11160 73.4 2.0e-55 212.2
Lsi09g00406 . 8 134 PRT Gene Family AT5G11160 74.0 2.0e-50 195.7
Lsi07g01320 . 8 139 PRT Gene Family AT5G11160 68.1 2.6e-47 185.3
Lsi08g00585 . 1 190 PRT Gene Family AT1G71750 64.2 1.9e-68 255.8
Lsi02g01799 . 15 467 PRT Gene Family AT1G55810 85.2 1.2e-224 775.8
Lsi05g00389 . 10 414 PRT Gene Family AT1G55810 67.6 1.3e-162 569.7
Lsi02g01799 . 64 479 PRT Gene Family AT3G27440 75.5 1.2e-184 642.9
Lsi05g00389 . 30 414 PRT Gene Family AT3G27440 64.5 9.5e-147 516.9
Lsi02g01799 . 11 466 PRT Gene Family AT3G27190 74.9 3.6e-206 714.5
Lsi05g00389 . 4 414 PRT Gene Family AT3G27190 75.7 4.3e-191 664.5
Lsi01g01465 . 4 350 PRT Gene Family AT3G53900 52.1 2.3e-86 315.8
Lsi02g01799 . 1 467 PRT Gene Family AT4G26510 83.9 1.7e-229 792.0
Lsi05g00389 . 3 414 PRT Gene Family AT4G26510 68.6 8.1e-171 597.0
Lsi02g01799 . 11 469 PRT Gene Family AT5G40870 73.8 6.8e-205 710.3
Lsi05g00389 . 4 414 PRT Gene Family AT5G40870 77.1 4.6e-193 671.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011220 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00585 Lsi_Chr08 FPKM 111.053665 117.286255 80.72625 80.220947 94.769714 97.479469 93.016815 88.983337 89.53363 86.890503