Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00587 ATGGCGGCTACAGTTCCGACACCGGCGACTTCCGCTTCAGTTCAAACGGCGGCGATTCCTCCTTCAACAGGCACTGTGGCCACTGGAGGCGGGTTTTTGAGTTCGTCATTGTATGTAGGCGATCTGGACCAGAGCGTGAACGAAGGACAGCTTTTGGAACTGTTCGGCCAAGTGGCTCAGGTTGTTTCTATTAGGGTTTGCAGGGATCAGACACGCAGGCAATCGCTTGGATATGCTTATGTTAATTTTAGCAGCCATCAGGATGCTGTCAACGCCATGGAACATTTGAATTTCACCCCTGTTAATGGGAAGCCTATCAGGATTATGATCTCTAATAGAGATCCTAGCATTCGAAAAAGTGGCTATGCAAATATTTTTATCAAAAATCTGGACACATCAATTGATAACAAGGCATTACATGATACATTTGCTACTTTTGGTACTGTCCTTTCTTGTAAAGTTGCTATTGATAGCAATGGTCAATCAAAAGGTTATGGGTTTGTGCAATTTGAAAACGAGGAATCAGCCGAAAGCTCCATAATAAGGTTGAATGGCATGCTGCTCAATGATAAGCAAGTTTATGTTGGACATTTTATTCGACACCAAGAAAGGATTCGAGCTAATGGATCGCAGTTTACTAATGTTTATGTGAAAAACTTACCAGAAACTACCACGGATGATGACCTAAAAAATCTTTTTGCCGCACATGGTGCCATTACTAGTGCAATTGTCATGACAGATTCAAATGGGAAGTCCAAATGTTTTGGTTTTGTGAACTTCCAGAACACAGACTCTGCTGCTGCTGCAGTTGAAAAGTTGAACGGTTCTGTCCTTGGTGATGACAAAATTTTGTACGTAGGTAGGGCTCAAAGGAAAGCAGAAAGGGAGGCCGAGTTGAAAGCAAAATTTGAACAGGAAAGAAAGAGTAGATTTGAAAAATTACAAGGTGCTAATTTGTACATCAAAAATCTTGATGACCATATTGATGATGAGAAGCTTAAAGAGTTATTCTCTGAGTATGGAACAATCACATCATGCAAGGTTATGCTTGACCAACATGGACTCAGCAAGGGGTCTGGTTTTGTTGCCTTTTCTTCACCAGATGAAGCAACCAGAGCTTTAAATGAAATGAACGGAAAGATGAAAGGAAGGAAGCCTCTGTATGTGGCTGTTGCCCAGCGCAAGGAAGAAAGAAAAGCTCGGCTGCAGGCACAATTTGCTCAAATCCGAGCGACTGGTGGAATATCATCTTTGCCTTCTGGAATGCCAGGATTTCATCCGGGGGCACCGCGAGTTACACCTCAGCAGGTGTATTTTGGTCAGGGAAACCCTGGGCTAGTGCCCCCACAGCCTGCTGGATATGGCTTCCAGCCTCAACTCATGAGCGGGATGCGACCTGGTATGGGCCCGAACTTCCTCATGCCTTACCAGTTTCAGAGGCAAGGACAGCCCGGGCCACGCTCAGGGATGAGGCGAGGTGGAAATTCACAACCTGTACCGCAGCAGCAGTTTTCTCAATGGGGTCGAATCATAGAAGCTTTTGTAGAAATTTGTTTGTTGCTCCGTGGCTCTGGACAAGGCTTTAGATACATGAACAATGCACGAAATGGATTAGAGCCGCCCATCCTACCCCAAGGTCTTGTTGGTCCAATGATGCCTCTAGCTTTTGATAGTTCTGGAGTGTCTAGCTCCCCTATTGACATCCAGCGATCAAGGGCCGTGCCTACTTCAACACTCGCTTCTGCATTAGCTTCCGCTACACCGGAAAACCAGCGTGTGATGCTCGGCGAGCAGCTGTATCCACTCGTGGAACGTCTCGAGCCAGGTCATGCAGCAAAGGTTACTGGAATGTTGCTGGAGATGGACCAACCGGAGGTGCTTCATCTCATCGAGTCACCTGATGACTTGAAGAGTAAAGTGGCTGAGGCAATGGAAGTCCTCCGCAAAGCTTTGTCGGAACCCGAGCTTTCTGATCAGCTTGGTGCATTAGCCCTTACCAAATGA 2004 46.16 MAATVPTPATSASVQTAAIPPSTGTVATGGGFLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYANIFIKNLDTSIDNKALHDTFATFGTVLSCKVAIDSNGQSKGYGFVQFENEESAESSIIRLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTDDDLKNLFAAHGAITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLNGSVLGDDKILYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATRALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRATGGISSLPSGMPGFHPGAPRVTPQQVYFGQGNPGLVPPQPAGYGFQPQLMSGMRPGMGPNFLMPYQFQRQGQPGPRSGMRRGGNSQPVPQQQFSQWGRIIEAFVEICLLLRGSGQGFRYMNNARNGLEPPILPQGLVGPMMPLAFDSSGVSSSPIDIQRSRAVPTSTLASALASATPENQRVMLGEQLYPLVERLEPGHAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKALSEPELSDQLGALALTK 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14135174 14139090 - Lsi08G005870.1 Lsi08g00587 668513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00587 667 SUPERFAMILY RNA-binding domain, RBD 35 200 IPR035979 GO:0003676
Lsi08g00587 667 SMART poly_2 587 650 IPR002004 GO:0003723
Lsi08g00587 667 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Lsi08g00587 667 PANTHER POLYADENYLATE-BINDING PROTEIN 35 655 - -
Lsi08g00587 667 CDD RRM1_I_PABPs 36 115 - -
Lsi08g00587 667 Gene3D - 204 313 IPR012677 -
Lsi08g00587 667 SUPERFAMILY RNA-binding domain, RBD 212 398 IPR035979 GO:0003676
Lsi08g00587 667 MobiDBLite consensus disorder prediction 478 501 - -
Lsi08g00587 667 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 394 IPR000504 GO:0003723
Lsi08g00587 667 Gene3D - 571 651 - -
Lsi08g00587 667 PANTHER RNA BINDING PROTEIN 35 655 - -
Lsi08g00587 667 Pfam Poly-adenylate binding protein, unique domain 583 647 IPR002004 GO:0003723
Lsi08g00587 667 Gene3D - 33 122 IPR012677 -
Lsi08g00587 667 CDD RRM3_I_PABPs 212 292 - -
Lsi08g00587 667 CDD RRM4_I_PABPs 316 394 - -
Lsi08g00587 667 Gene3D - 314 412 IPR012677 -
Lsi08g00587 667 SMART rrm1_1 36 109 IPR000504 GO:0003723
Lsi08g00587 667 SMART rrm1_1 318 390 IPR000504 GO:0003723
Lsi08g00587 667 SMART rrm1_1 214 287 IPR000504 GO:0003723
Lsi08g00587 667 SMART rrm1_1 124 196 IPR000504 GO:0003723
Lsi08g00587 667 CDD RRM2_I_PABPs 121 197 IPR045305 -
Lsi08g00587 667 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 283 IPR000504 GO:0003723
Lsi08g00587 667 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 387 IPR000504 GO:0003723
Lsi08g00587 667 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 107 IPR000504 GO:0003723
Lsi08g00587 667 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 193 IPR000504 GO:0003723
Lsi08g00587 667 SUPERFAMILY PABC (PABP) domain 468 655 IPR036053 GO:0003723
Lsi08g00587 667 Coils Coil 286 306 - -
Lsi08g00587 667 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
Lsi08g00587 667 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 195 IPR000504 GO:0003723
Lsi08g00587 667 Gene3D - 123 197 IPR012677 -
Lsi08g00587 667 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 35 648 IPR006515 GO:0003723
Lsi08g00587 667 Coils Coil 392 412 - -
Lsi08g00587 667 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 575 652 IPR002004 GO:0003723
Lsi08g00587 667 PRINTS Paraneoplastic encephalomyelitis antigen family signature 337 349 IPR002343 GO:0003723|GO:1990904
Lsi08g00587 667 PRINTS Paraneoplastic encephalomyelitis antigen family signature 322 337 IPR002343 GO:0003723|GO:1990904
Lsi08g00587 667 PRINTS Paraneoplastic encephalomyelitis antigen family signature 304 321 IPR002343 GO:0003723|GO:1990904
Lsi08g00587 667 PRINTS Paraneoplastic encephalomyelitis antigen family signature 213 228 IPR002343 GO:0003723|GO:1990904
Lsi08g00587 667 SMART rrm2_1 36 109 IPR003954 GO:0003676
Lsi08g00587 667 SMART rrm2_1 318 389 IPR003954 GO:0003676
Lsi08g00587 667 SMART rrm2_1 214 286 IPR003954 GO:0003676
Lsi08g00587 667 SMART rrm2_1 124 196 IPR003954 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02602 Lsi-Chr2:32407727 Lsi08g00587 Lsi-Chr8:14135174 8.23E-16 dispersed
Lsi03g00505 Lsi-Chr3:5831144 Lsi08g00587 Lsi-Chr8:14135174 0 dispersed
Lsi03g01958 Lsi-Chr3:30997958 Lsi08g00587 Lsi-Chr8:14135174 8.23E-18 dispersed
Lsi05g00226 Lsi-Chr5:3013456 Lsi08g00587 Lsi-Chr8:14135174 0 dispersed
Lsi05g01351 Lsi-Chr5:21375433 Lsi08g00587 Lsi-Chr8:14135174 8.59E-06 dispersed
Lsi07g01183 Lsi-Chr7:17339455 Lsi08g00587 Lsi-Chr8:14135174 8.02E-07 dispersed
Lsi08g00587 Lsi-Chr8:14135174 Lsi08g01446 Lsi-Chr8:22647082 3.45E-11 dispersed
Lsi09g01506 Lsi-Chr9:23102767 Lsi08g00587 Lsi-Chr8:14135174 9.25E-10 dispersed
Lsi10g01153 Lsi-Chr10:15840242 Lsi08g00587 Lsi-Chr8:14135174 1.42E-10 dispersed
Lsi10g01357 Lsi-Chr10:17769673 Lsi08g00587 Lsi-Chr8:14135174 2.03E-06 dispersed
Lsi08g00584 Lsi-Chr8:14117763 Lsi08g00587 Lsi-Chr8:14135174 1.60E-08 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00587 K13126 - csv:101219081 1183.7