Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi08g00587 | ATGGCGGCTACAGTTCCGACACCGGCGACTTCCGCTTCAGTTCAAACGGCGGCGATTCCTCCTTCAACAGGCACTGTGGCCACTGGAGGCGGGTTTTTGAGTTCGTCATTGTATGTAGGCGATCTGGACCAGAGCGTGAACGAAGGACAGCTTTTGGAACTGTTCGGCCAAGTGGCTCAGGTTGTTTCTATTAGGGTTTGCAGGGATCAGACACGCAGGCAATCGCTTGGATATGCTTATGTTAATTTTAGCAGCCATCAGGATGCTGTCAACGCCATGGAACATTTGAATTTCACCCCTGTTAATGGGAAGCCTATCAGGATTATGATCTCTAATAGAGATCCTAGCATTCGAAAAAGTGGCTATGCAAATATTTTTATCAAAAATCTGGACACATCAATTGATAACAAGGCATTACATGATACATTTGCTACTTTTGGTACTGTCCTTTCTTGTAAAGTTGCTATTGATAGCAATGGTCAATCAAAAGGTTATGGGTTTGTGCAATTTGAAAACGAGGAATCAGCCGAAAGCTCCATAATAAGGTTGAATGGCATGCTGCTCAATGATAAGCAAGTTTATGTTGGACATTTTATTCGACACCAAGAAAGGATTCGAGCTAATGGATCGCAGTTTACTAATGTTTATGTGAAAAACTTACCAGAAACTACCACGGATGATGACCTAAAAAATCTTTTTGCCGCACATGGTGCCATTACTAGTGCAATTGTCATGACAGATTCAAATGGGAAGTCCAAATGTTTTGGTTTTGTGAACTTCCAGAACACAGACTCTGCTGCTGCTGCAGTTGAAAAGTTGAACGGTTCTGTCCTTGGTGATGACAAAATTTTGTACGTAGGTAGGGCTCAAAGGAAAGCAGAAAGGGAGGCCGAGTTGAAAGCAAAATTTGAACAGGAAAGAAAGAGTAGATTTGAAAAATTACAAGGTGCTAATTTGTACATCAAAAATCTTGATGACCATATTGATGATGAGAAGCTTAAAGAGTTATTCTCTGAGTATGGAACAATCACATCATGCAAGGTTATGCTTGACCAACATGGACTCAGCAAGGGGTCTGGTTTTGTTGCCTTTTCTTCACCAGATGAAGCAACCAGAGCTTTAAATGAAATGAACGGAAAGATGAAAGGAAGGAAGCCTCTGTATGTGGCTGTTGCCCAGCGCAAGGAAGAAAGAAAAGCTCGGCTGCAGGCACAATTTGCTCAAATCCGAGCGACTGGTGGAATATCATCTTTGCCTTCTGGAATGCCAGGATTTCATCCGGGGGCACCGCGAGTTACACCTCAGCAGGTGTATTTTGGTCAGGGAAACCCTGGGCTAGTGCCCCCACAGCCTGCTGGATATGGCTTCCAGCCTCAACTCATGAGCGGGATGCGACCTGGTATGGGCCCGAACTTCCTCATGCCTTACCAGTTTCAGAGGCAAGGACAGCCCGGGCCACGCTCAGGGATGAGGCGAGGTGGAAATTCACAACCTGTACCGCAGCAGCAGTTTTCTCAATGGGGTCGAATCATAGAAGCTTTTGTAGAAATTTGTTTGTTGCTCCGTGGCTCTGGACAAGGCTTTAGATACATGAACAATGCACGAAATGGATTAGAGCCGCCCATCCTACCCCAAGGTCTTGTTGGTCCAATGATGCCTCTAGCTTTTGATAGTTCTGGAGTGTCTAGCTCCCCTATTGACATCCAGCGATCAAGGGCCGTGCCTACTTCAACACTCGCTTCTGCATTAGCTTCCGCTACACCGGAAAACCAGCGTGTGATGCTCGGCGAGCAGCTGTATCCACTCGTGGAACGTCTCGAGCCAGGTCATGCAGCAAAGGTTACTGGAATGTTGCTGGAGATGGACCAACCGGAGGTGCTTCATCTCATCGAGTCACCTGATGACTTGAAGAGTAAAGTGGCTGAGGCAATGGAAGTCCTCCGCAAAGCTTTGTCGGAACCCGAGCTTTCTGATCAGCTTGGTGCATTAGCCCTTACCAAATGA | 2004 | 46.16 | MAATVPTPATSASVQTAAIPPSTGTVATGGGFLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYANIFIKNLDTSIDNKALHDTFATFGTVLSCKVAIDSNGQSKGYGFVQFENEESAESSIIRLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTDDDLKNLFAAHGAITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLNGSVLGDDKILYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATRALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRATGGISSLPSGMPGFHPGAPRVTPQQVYFGQGNPGLVPPQPAGYGFQPQLMSGMRPGMGPNFLMPYQFQRQGQPGPRSGMRRGGNSQPVPQQQFSQWGRIIEAFVEICLLLRGSGQGFRYMNNARNGLEPPILPQGLVGPMMPLAFDSSGVSSSPIDIQRSRAVPTSTLASALASATPENQRVMLGEQLYPLVERLEPGHAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKALSEPELSDQLGALALTK | 667 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 14135174 | 14139090 | - | Lsi08G005870.1 | Lsi08g00587 | 668513 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi08g00587 | 667 | SUPERFAMILY | RNA-binding domain, RBD | 35 | 200 | IPR035979 | GO:0003676 | |
Lsi08g00587 | 667 | SMART | poly_2 | 587 | 650 | IPR002004 | GO:0003723 | |
Lsi08g00587 | 667 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 35 | 113 | IPR000504 | GO:0003723 | |
Lsi08g00587 | 667 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 35 | 655 | - | - | |
Lsi08g00587 | 667 | CDD | RRM1_I_PABPs | 36 | 115 | - | - | |
Lsi08g00587 | 667 | Gene3D | - | 204 | 313 | IPR012677 | - | |
Lsi08g00587 | 667 | SUPERFAMILY | RNA-binding domain, RBD | 212 | 398 | IPR035979 | GO:0003676 | |
Lsi08g00587 | 667 | MobiDBLite | consensus disorder prediction | 478 | 501 | - | - | |
Lsi08g00587 | 667 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 317 | 394 | IPR000504 | GO:0003723 | |
Lsi08g00587 | 667 | Gene3D | - | 571 | 651 | - | - | |
Lsi08g00587 | 667 | PANTHER | RNA BINDING PROTEIN | 35 | 655 | - | - | |
Lsi08g00587 | 667 | Pfam | Poly-adenylate binding protein, unique domain | 583 | 647 | IPR002004 | GO:0003723 | |
Lsi08g00587 | 667 | Gene3D | - | 33 | 122 | IPR012677 | - | |
Lsi08g00587 | 667 | CDD | RRM3_I_PABPs | 212 | 292 | - | - | |
Lsi08g00587 | 667 | CDD | RRM4_I_PABPs | 316 | 394 | - | - | |
Lsi08g00587 | 667 | Gene3D | - | 314 | 412 | IPR012677 | - | |
Lsi08g00587 | 667 | SMART | rrm1_1 | 36 | 109 | IPR000504 | GO:0003723 | |
Lsi08g00587 | 667 | SMART | rrm1_1 | 318 | 390 | IPR000504 | GO:0003723 | |
Lsi08g00587 | 667 | SMART | rrm1_1 | 214 | 287 | IPR000504 | GO:0003723 | |
Lsi08g00587 | 667 | SMART | rrm1_1 | 124 | 196 | IPR000504 | GO:0003723 | |
Lsi08g00587 | 667 | CDD | RRM2_I_PABPs | 121 | 197 | IPR045305 | - | |
Lsi08g00587 | 667 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 215 | 283 | IPR000504 | GO:0003723 | |
Lsi08g00587 | 667 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 319 | 387 | IPR000504 | GO:0003723 | |
Lsi08g00587 | 667 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 37 | 107 | IPR000504 | GO:0003723 | |
Lsi08g00587 | 667 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 125 | 193 | IPR000504 | GO:0003723 | |
Lsi08g00587 | 667 | SUPERFAMILY | PABC (PABP) domain | 468 | 655 | IPR036053 | GO:0003723 | |
Lsi08g00587 | 667 | Coils | Coil | 286 | 306 | - | - | |
Lsi08g00587 | 667 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 213 | 291 | IPR000504 | GO:0003723 | |
Lsi08g00587 | 667 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 123 | 195 | IPR000504 | GO:0003723 | |
Lsi08g00587 | 667 | Gene3D | - | 123 | 197 | IPR012677 | - | |
Lsi08g00587 | 667 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 35 | 648 | IPR006515 | GO:0003723 | |
Lsi08g00587 | 667 | Coils | Coil | 392 | 412 | - | - | |
Lsi08g00587 | 667 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 575 | 652 | IPR002004 | GO:0003723 | |
Lsi08g00587 | 667 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 337 | 349 | IPR002343 | GO:0003723|GO:1990904 | |
Lsi08g00587 | 667 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 322 | 337 | IPR002343 | GO:0003723|GO:1990904 | |
Lsi08g00587 | 667 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 304 | 321 | IPR002343 | GO:0003723|GO:1990904 | |
Lsi08g00587 | 667 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 213 | 228 | IPR002343 | GO:0003723|GO:1990904 | |
Lsi08g00587 | 667 | SMART | rrm2_1 | 36 | 109 | IPR003954 | GO:0003676 | |
Lsi08g00587 | 667 | SMART | rrm2_1 | 318 | 389 | IPR003954 | GO:0003676 | |
Lsi08g00587 | 667 | SMART | rrm2_1 | 214 | 286 | IPR003954 | GO:0003676 | |
Lsi08g00587 | 667 | SMART | rrm2_1 | 124 | 196 | IPR003954 | GO:0003676 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g02602 | Lsi-Chr2:32407727 | Lsi08g00587 | Lsi-Chr8:14135174 | 8.23E-16 | dispersed | |
Lsi03g00505 | Lsi-Chr3:5831144 | Lsi08g00587 | Lsi-Chr8:14135174 | 0 | dispersed | |
Lsi03g01958 | Lsi-Chr3:30997958 | Lsi08g00587 | Lsi-Chr8:14135174 | 8.23E-18 | dispersed | |
Lsi05g00226 | Lsi-Chr5:3013456 | Lsi08g00587 | Lsi-Chr8:14135174 | 0 | dispersed | |
Lsi05g01351 | Lsi-Chr5:21375433 | Lsi08g00587 | Lsi-Chr8:14135174 | 8.59E-06 | dispersed | |
Lsi07g01183 | Lsi-Chr7:17339455 | Lsi08g00587 | Lsi-Chr8:14135174 | 8.02E-07 | dispersed | |
Lsi08g00587 | Lsi-Chr8:14135174 | Lsi08g01446 | Lsi-Chr8:22647082 | 3.45E-11 | dispersed | |
Lsi09g01506 | Lsi-Chr9:23102767 | Lsi08g00587 | Lsi-Chr8:14135174 | 9.25E-10 | dispersed | |
Lsi10g01153 | Lsi-Chr10:15840242 | Lsi08g00587 | Lsi-Chr8:14135174 | 1.42E-10 | dispersed | |
Lsi10g01357 | Lsi-Chr10:17769673 | Lsi08g00587 | Lsi-Chr8:14135174 | 2.03E-06 | dispersed | |
Lsi08g00584 | Lsi-Chr8:14117763 | Lsi08g00587 | Lsi-Chr8:14135174 | 1.60E-08 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi08g00587 | K13126 | - | csv:101219081 | 1183.7 |