Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00607 ATGGACTTCCATAGCCATTTGTTACGTTGCTTTACTGCTTTTGCTTTGGTTCTTGCTTTTGGAGTGTCTTTATCGGAGGCCGCTATAACTCTAGGTTCGTCTTTGAGAGCTTCGGATCCTAAGCAGGCGTGGCATTCTTCTAATGGATATTTCTCTTTGAGTTTCATTCCATCCGATTCTTCCGGTTCTTCTTCTTTTATAGCCGGCATAGTCATCACTGGTAGCCTTCATACTATCTGGTCCGCTGGTGGCGACGCTGCGGTGGATGCTTCTGGTGCTCTTCACTTTCAATCTGACGGTAACCTTCAACTCGTCAGTGGCTCTGGTGCCGTCCTTTGGGAATCTAAAACCACCGGCCGTGGTGTCTCCTCTGCTGTGCTCGAGGATACTGGCAACATCGTCCTTCTAAATAGTAGCTCCCAGCCGGTCTGGTCTTCGTTCGATCACCCGACCGATACGATTGTTCCATCGCAGAATTTCACAGTGGGGATGGTCCTGCGATCTGGTCAGTATTTTTTTAACCTACTTGATTTTGGGAATATAACTCTGACTTGGAAGGGAGAAGGAGGCGATGTTGTTTATTGGAATCACGGTTTAAATACGTCGATCAATGGAACTTTGAATTCTCCTAGTTTACAATTAGATCCTATTGGGATGTTAGCTGTTTTCGATACCAAAATACCAGCTGGTTCATTTGTGGCTTATAGCGATGATTATGCAGATAATGGTGGGGTTGAAACTTTTAGGTTTCTAAGGTTGCAAAGTGATGGAAATTTAGGGATTCATAGCGTTGTTAGAGGCAGTGGATCTGAAACAGTGGGATGGGAAGCTGTTCCAGATAGATGTCAGATATTTGGGTTCTGTGGGGAACTTGGTATTTGTAGTTATAATGATACAAGTCCAATCTGTAGTTGCCCATCTGCAAACTTTGAACCAGTTGATCAAAACGATTGGAAGAAAGGGTGTAAGAGGAAGTTGGATCTTGGAAACTGTTCCAGCGGCGTTTATATGTTAAAGTTGGAAAATACAAAGCTTTTACAATATCCATGGAATTTCCCAGGCTTACAGTCTTACTCCATGCAGATATCAGGCTGTCAATCAAATTGTCGACAAAGTGATGCCTGTATTGCCTCCACTGCACGATCAGATGGGAGTGGTTTTTGTTATTATTACCTATTGTCAGGTTTTATTAGGGGATATCAGAGTCCTGCATTGCCAAGCACTTCATTTCTCAAGGTCTGTGGGGAGGTGCTCCCAAATCAACTGGAATCTTCCGATGTTTCGAGGCCGGGTGATAAGAATGTGAAGGCTTGGGTTTTGGCAGTTGTGGTTTTGGTTACCCTTTTTGCTATGATTGCTTTTGAGGCTGGTATATGGTGGTGGTGTTGCAGAAACAGCCCCAATTTTGGAGGGATGTCTAGCCAGTACACTCTTCTTGAGTATGCTTCTGGTGCTCCAGTCCAGTTCTCATATAAAGAACTCCATCGTGTGACGAACGGTTTCAAGGAAAAGCTTGGAGCTGGTGGATTTGGTGCTGTTTATAAAGGGGTTCTTACTAATAGGACAGTTGTTGCAGTGAAGCAACTGGAGGGAATTGAGCAGGGAGAGAAGCAATTTAGGATGGAGGTAGCAACTATAAGTAGCACACACCATTTGAATCTGGTGAGATTGATTGGTTTTTGCTCGGAAGGACGCCATAGGCTATTAGTATATGAGCTCATGAAAAATGGCTCTCTTGATGGTTTGCTATTCAAGGGAGAAGAAGGGCAATGTGGGAAGTTCCTTAGCTGGGAAGATCGTTTTAAAATTGCTGTTGGCACTGCCAAAGGGATCACATACCTTCATGAAGAGTGCCGTGATTGCATCATTCATTGTGATATAAAGCCAGAGAACATACTCTTAGATGAGCATTTAAATGCTAAAGTCTCAGATTTTGGCCTGGCAAAGCTCATTAATATGAAAGACCACAGATATCGAACGTTGACTAGCGTTAGAGGAACAAGGGGATATTTGGCACCTGAATGGCTAGCAAATCTGCCACTGACTTCAAAATCTGATGTTTTCAGCTATGGTATGGTTCTTTTAGAGATCGTGAGTGGACGAAGGAATTTCGACGTTTCTGCAGAAACAAATCACAAGAGATTCTCTTTGTGGGCTTATGAAGAGTTTGAAAAGGGAAATCTCATAGAAATTGTTGACAAAAAGCTGGTGGATCATGAGATTGATATGGAGCAAGTGAACAGGGTGCTTCAAGTGAGCTTTTGGTGCATCCAGGAGCAACCATCTCAGAGGCCAATGATGGGAAAAGTGGTGCAGATGATCGAAGGAGTCATCGACATCGAGAGGCCTCCTGCACCCAAAGTAACATCCATGGTTTCTGCAAGTGGAACAAGCACTTATATCAGCAGCAATTTGAGCAATTTCTCCACCACACCCACAGCCGAAACTCCGGCTACACCGGCCTCATTTTCGTCGTCTCTTGCTGCACTAGACTTCCCTCCTTGTGGCAGCAATATTGAGAAAACAAGTTCATCTCTTCTGCAATCAAGGTACGACTAA 2559 43.96 MDFHSHLLRCFTAFALVLAFGVSLSEAAITLGSSLRASDPKQAWHSSNGYFSLSFIPSDSSGSSSFIAGIVITGSLHTIWSAGGDAAVDASGALHFQSDGNLQLVSGSGAVLWESKTTGRGVSSAVLEDTGNIVLLNSSSQPVWSSFDHPTDTIVPSQNFTVGMVLRSGQYFFNLLDFGNITLTWKGEGGDVVYWNHGLNTSINGTLNSPSLQLDPIGMLAVFDTKIPAGSFVAYSDDYADNGGVETFRFLRLQSDGNLGIHSVVRGSGSETVGWEAVPDRCQIFGFCGELGICSYNDTSPICSCPSANFEPVDQNDWKKGCKRKLDLGNCSSGVYMLKLENTKLLQYPWNFPGLQSYSMQISGCQSNCRQSDACIASTARSDGSGFCYYYLLSGFIRGYQSPALPSTSFLKVCGEVLPNQLESSDVSRPGDKNVKAWVLAVVVLVTLFAMIAFEAGIWWWCCRNSPNFGGMSSQYTLLEYASGAPVQFSYKELHRVTNGFKEKLGAGGFGAVYKGVLTNRTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYELMKNGSLDGLLFKGEEGQCGKFLSWEDRFKIAVGTAKGITYLHEECRDCIIHCDIKPENILLDEHLNAKVSDFGLAKLINMKDHRYRTLTSVRGTRGYLAPEWLANLPLTSKSDVFSYGMVLLEIVSGRRNFDVSAETNHKRFSLWAYEEFEKGNLIEIVDKKLVDHEIDMEQVNRVLQVSFWCIQEQPSQRPMMGKVVQMIEGVIDIERPPAPKVTSMVSASGTSTYISSNLSNFSTTPTAETPATPASFSSSLAALDFPPCGSNIEKTSSSLLQSRYD 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14377769 14380327 - Lsi08G006070.1 Lsi08g00607 668533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00607 852 SUPERFAMILY Protein kinase-like (PK-like) 481 774 IPR011009 -
Lsi08g00607 852 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Lsi08g00607 852 Gene3D Phosphorylase Kinase; domain 1 471 573 - -
Lsi08g00607 852 Pfam D-mannose binding lectin 79 163 IPR001480 -
Lsi08g00607 852 Gene3D - 149 276 IPR036426 -
Lsi08g00607 852 SMART blect_4 34 150 IPR001480 -
Lsi08g00607 852 PANTHER OS07G0415500 PROTEIN 13 835 - -
Lsi08g00607 852 PANTHER G-TYPE LECTIN S-RECEPTOR SERINE/THREONINE-PROTEIN KINASE 13 835 - -
Lsi08g00607 852 ProSiteProfiles Protein kinase domain profile. 499 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00607 852 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 171 IPR036426 -
Lsi08g00607 852 ProSitePatterns Protein kinases ATP-binding region signature. 505 527 IPR017441 GO:0005524
Lsi08g00607 852 CDD STKc_IRAK 505 776 - -
Lsi08g00607 852 PIRSF SRK 1 826 IPR024171 GO:0004674
Lsi08g00607 852 ProSiteProfiles Bulb-type lectin domain profile. 26 148 IPR001480 -
Lsi08g00607 852 Pfam Protein kinase domain 502 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00607 852 SMART serkin_6 499 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00607 852 Gene3D - 25 148 IPR036426 -
Lsi08g00607 852 CDD B_lectin 69 150 IPR001480 -
Lsi08g00607 852 Gene3D Transferase(Phosphotransferase) domain 1 574 785 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00607 - - - csv:101211415 1428.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02146 Lsi-Chr3:32607220 Lsi08g00607 Lsi-Chr8:14377769 1.59E-128 dispersed
Lsi05g01175 Lsi-Chr5:19671667 Lsi08g00607 Lsi-Chr8:14377769 2.04E-146 dispersed
Lsi08g00607 Lsi-Chr8:14377769 Lsi10g01037 Lsi-Chr10:14613760 3.95E-118 dispersed
Lsi08g00607 Lsi-Chr8:14377769 Lsi08g01207 Lsi-Chr8:20602006 2.12E-129 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1290 . . . . . . . . . . . . . . . . Cpe13g00715 . . . . . . . . . . . . . . . . . . . . . Cme03g01093 . . . Bda01g01467 . . . . . . . . . . Car15g00518 . . . . . . . . . . . . . . . . Lsi08g00607 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010545 1 1 0 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 2 0 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83835 PF00069 Pkinase 2.60E-50 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00607 Lsi_Chr08 FPKM 1.411014 1.953759 2.450649 2.679966 2.656623 3.304883 2.797806 5.481013 5.052278 5.698538