Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00608 GCGTTAACTCAAAAACAATTTGATTCCAAATCCCAGAAATCATCTCTTCATTTTGACGACGAATTCGATACCTTCAAATTGAAATCCGTTGCTGAATCTCTGAGATCGGCTACATCTTGTGAAACTTTGATCAATTCGAAGTATTCGAGTCGATTAAGTAGTTCGATGGCTATGGGACTGGAGGAGGAATCGGAGAGGAAGGGCGGCGTAGCGCTGTATTTTCCGGCAAATGACGACGAGCCTTCGTCGGCATCGTCTTCTACTCCTCCTAGGCTGCCTCGCAGGCTTCGCCGTCGCCTAATGGAGTCTAAAGCGCCGTCTACTGCTGAAGAGATTGAAGCCAAGCTCCAGAAGGCTGATCTCCGTCGTCAGGCGAAGAGGCAAAGAGCTGGGTTTTTGATGGAGAGAAGAAGAACATGTGATATTGTTCATGCTAATATAAAAGGGATGCCTAAGCAGGACCCATCGGCAATTATAGCAAGTCTGTTAAGTCAAGAATCTGTGAAGTCAATGGAATTTGAGCAGCTTGCTTCTAAGATCAATGCAACTGCAACCATACAAACTGTAAGAGCTTTACTAGTTCGCATAGAGAGCCGATTTACGTTCTTGAAAACAACTTCTGGAAATAAATTAAGCTTTGAGAAGGTAGATCATCTTCTCAAGCGTGTTGGACTGCATGGCAGAAGCAGTAATCAAGTAACCAAGACAAGTAGGTCAGAGACTATTGGCTCGAGGAAAGCTGCAAAGGTTGCCTCTAAATTATCTAGATACCCTGCTAAAGTAGTGCTTTTTGCTTACATGATACTGGCGCATCCGGAGACAGTTTTTATTGGGAAGAGTGAGGTTGAAAATGCACTGCTGGAGTCAGCATCAAATTTTGTTCAGGAATTCGAGTTGTTGATTAAGGTTATATTAGAGGGTCCCTTTAGAACCTCTCATGAGGAGCAATCTTCCACACCACCTTCGTTTAGATCCCAGTTGGAGATATTTGACAAAAGATGGTGCTCTTACCTTCATCACTTTGTCGTGTGGAAAGACAAGGATGCTATATTTTTTGAGGAAAATATGAAGGGTGTTGCTCGTCAGTTGGAGCTTTTTATGGCGCAAACTTCTAAGCTGAGATTGGAAGGTGATAATGGTAATATCGCACATGATATACAGGTCAATGAGGAGCAGAAGATGCTGAGAGAAAAGTTACAGCAACTTGGGAGTTCAGAAAATTCTTTATCAGTTGCTGAGTCAAGCTCCTCAGAATTGGATACTGAATATTCTACAGGGTTCCGACAATCAGAAAGTTCCAAGTCAGAGCAACGCACAAGCTCCAGTGAAATGCTAGTCACTGAGAATGAGTTAGTTGCAAATGAGATTGTCCATGACTATCACCATTTCCTTACGGTCACCTCGAATGTTCCAACTGAAGCTGAAACCAGTTTAAAGGCAAAATTGAAAAAGACAATGGAAAAAGCATTTTGGGATGGCATCATGGAATCTATGGAAGAAGATGAGCCTGATTACAGCTGGGTTGTCAAGGTCCTGAAAGAGATCAGGGATGAATTGTGTGAGATGTCTCCGCTGTCCTGGAGATCAGAGATTGCTGAGAAAATTGATATTGAAATTCTAGCGCAGATTCTAAATTCAGGGACCCTGGATGTGGGTTATTTCAAACAACTTCTGGAATTTTGTTTAGTCACTCTGCGAAAACTTTCTGCCCCAGCTAAAGAGAAAGAGATGGAAGTGAGTTACCAGAAGCTGATGGAAGAGCTAGGAGACGTTTCCTGTTCTGGAGAGAACTCAAAGCGTTCATTTTCTCTCTTGATGGTCAAAGGTTTACGCTTTGTTCTACATCAGATTCAGAATCTAAAAGAAGAAATTGCAAATGCACATTTAAAGATGGTGGAACCACTCATCAAGGGCCCTGCTGGTTTGGAGTATCTAAGAAGTTCATTTTCTAAGCGATGTGGATCTCCTACTGATGCCCCTACCTCTTTACCCCTTACAAGGCAATGGCTTTCATCTGTATGGCCGGAAGTGGAGTTGGAGTGGAAAGAATACGCTGATTCTGTGGCTGCTGCTATGTCAAAAAATGCAGTTCAGCCAGAGATCCTTCCGTCTACCATACGAACTGGAGGAAGCTCAAAGATCAGCCCGACATCTGGAATAATAAATCAAATAACGGGGCTCAGCCATGATACTCTGCCGGAGACTCTTAAGCTTAATCTCGCCAGGCTCAGGATGGTACAGTCTCGACTTCAGAGAATCATCGTCATTTCTACCAGCTTGTTGGTCATGCGTCAAATTCTTCTCAACGAGAGATTGGTCTCCAGTCCAGTCGAAGTCGATAGTATATTATCAACATGCGCCAAACGTCTCTGCAACCTCTTGGACACTGTAGAAAATGCAGGAATACTGGAGATCGTCGAAGCCATCAGTAGTGTATTAGTTGATCGCGATTCAGATCCTGAAAAACTCCAGTCAAGAAAGCAGATCATAGCAAACATGTTGATAAAAAGTTTACAAGAAGGTGACGTCATATACACTCGAGTTTCACGCAACATTTATTTGGCCATGCGAGGCGTTGTGCTCGGAGGAAGTGGTAGAAAGGGAAGGCAACAGGTGGAAGTGGCTCTTTTGCCCATCGGAGGCGGAGCACTTATAGAAAAGGTGATTGAGGCAGCAGAAGTTCTGGTTGCGATGGCTGTTGTGTCTGAAAAAAGGAATAAACCATTAACAAACTACAAAACAACATCTTTATACACAAGCAAAATGAATTTTCAATGTAAAAACGTAAAGAATGCATTGAATTTGTTGCTCAATAATTCCACTTTTACCCTCCGCAACGACTTCACTTCACACAGACGTTTTCACCAATTTCTCTCTCTTTTCTCTCTCTCCGGAGAGAGAAATCCTGCCGGCGACCGCCATTTCCGACCAACCATGCTCTTGAAGCCCTTCAACACCGTCGCCGTCGTATTCATGCTCGCTTTCGCATTCTTCATCATCTTCTTCACTGGCTTCCTCGAATTTCCACCGGCATCGACTTCCATCGTACCGTCCACCGACGATCTGAATCTCTCCGCAGCCGAATTCGCTTCCGACCCTTTCACTGATTTGATCACCGCCTTTAAGAAATGGGACTCTCAGGTGGGTTGTGATCGGTTCCGGGAGAAAATTGGCGGCGGTTTGAGCAATGGGTCTTTGTCGGTTTCGCTGCAGCAAGTCGGCGGCGACTCTAATTCGGAATGCGGGGGGCTGAAACTGAATCATGTTGCTGTTTTGGTGAAAGGATGGACTTGGATTCCTGATAATTTAGATAATTTGTATTCGTGTTCCTGCGGATTGAGCTGTCTTTGGACTAAAGCTTCTGTTCTTGCTGATAAACCTGACGCCTTGTTCTTTGAAACCAGTACGCCTCCTCGGCAGTTTATCTTAAATCCGTTCTTCGACCGTGGAGATGAAGATTGCAGGGAAGTTAAGTTCAATGGTGGTTGGGATGTGGCCGTAGGAGATCCTCTTCGCATATATATGGATCTCGAGGCTGGTCGGAAGCGCTCAGGTTTTGAGGATCTATTTGTTAGTTATCATGCAGAAGATGATGTTCAGTCAACTTATGCAGGAGCACTCTTTCACAACAGTCGAAACTATCACGATACACTTGTTTATTGGTCGTCGTCTCGTTGTCTTCCCCAAAGAAATCAGCTTGCTAGGAAACTTCTAAGCTTGCTGCCCCACCATTCATTTGGCAAGTGCTTGAACAACGTAGGCGGCCTCGATATGGCCCTTTCGATGTACCCTGAATGTGCAAATGATGCCAGTGTCACCCCGAAATGGTGGGATCACTTGCATTGTGCAATGTCTCAATACAAATTCATTCTCGCAATTGAAAACACAATGACTGAGAGTTACGTAACGGAGAAGCTATTTTACGCGCTAGACTCTGGTTCGGTTCCGATCTATTTTGGTGCCCCTAATGTCTGGGACTTTGTTCCTCCACATTCTATAATTGATGGGTCTAAATTCAGCTCCTTGGAAGAGTTAGCTTCTTACGTGAAGCGACTTGCGGATGATCCAGTAGCTTATGCTGAGTACCATGCTTGGAGACGATGTCGTGCATTGGGTAACTATAGAAGGACCCGAGCTGCGAGCCTTGACACGCTGCCATGTCGGTGGGATGAGTTTGCTGTACAAGGAAATGAATTTAGAGCAGGCGGGAGTTCGCTTAGTTTCGAGGTTTGTGAGAAAAATGGGAGGCGACAACTTCTTCTTCTTCTTCTCTACAAAGCCATGAAACTGCTTCTCTCTTTCAAATCACCTCTGAAACTTCACGCTCTCATTCTTCCTTCACTCTCTTTCCACACTTCCTTCTTCAACTTTTCAACTCCTCTCCCTGCCCTCAAATTCCCCACAACCAGACCCCCATCCATTCCTTCTCCAAAATCAATGGCCACCTCAATCTCTTCCCCGAAACCACTGGTTCAAGTCAAGGACACCATCGAACTCACTGAAATCGAGGAGAAGATTTTTCATAGGCTTCTCGGGACTCTTCGTCACTTCAATCTCCAAACCCAGCTTCGTGTTGCCGGCGGTTGGGTTCGCGATAAGAATTTAGGAACTATTTCGTGGGGTTTTGGAGATTTCTTTAATTTCATCGGGCTTCTCGGCAAAGATTGTTACGACATTGATATCGCTCTAGACAATATGTTGGGTAGCGAGTTTGTGGACAAGGTTAGAGAGTATTTGTGGACAGTTGGGGAAGAAGCGCAAGGAGTCGCTGTTATTCCATGGTATGAGAATCATGTTAACCCTGACCAATCAAAACATCTAGAAACAGCAAGGATGCGTATCTTTGATATATGGATTGATTTTGTAAACTTGAGGTGTGAGGAATACAGTGAGAATAGCCGTATTCCTACTAAGCAAAAGTTTGGGACGGCAGAAGAGGATGCGTATAGAAGGGATTTAACAATCAATAGCTTGTTCTACAATATCAACTTGAGCATAGTTGAAGATTTTACAAAAAGAGGCATTTCGGATTTGAAGTTTGGGAAAATTGTGACTCCTTTACCTGCTAAAGCTACATTTATGGATGATCCACTTCGAGTCCTTCGAGCCATACGTGCAAGATTTGAATTCACATTGGACGAAGAACTGAAAGAAGCTGCAGCATGTGAAGAAGTAAAGGCTGCTCTTGCTGCAAAGATTAGCAGAGAACGTATTGGAGTTGAAATTGATCTCATGATTTCTGGGAATCAGCCAGTTAAAGCAATGGGCTACATTTGTGATTTGACTTTATTTTGGACCGTCTTTACTCTTCCTTCTAACACTGAACCTGAAATATCTGAGGTGTGTAATAGAACAAGAAAATTGAGACAAACCAATGCTTCTTATTTAATGAATATATACAGTTCTACCATATTCCTTATGGTTCATCCTAAAAAACTTGGTCTCTGTCTCTCTCTCTCTCATGTTTTTGGGCTTTGCATTGCTTGTGTAGATGCCACGTGGAACCTCATTCCACACATCAAATGCTTTACCTTTAATGACGAACAGAAAAGACTCTCTATGTATGCTTCTCTCTTCCTTCCATTCAGAAAATTCACATTTAAAGATAAGAAATCCAAAAAGATATTCTTGTCTGCTTCAAACTCCGAATCTTCTGCCCTACAGATTCCTGTTGAAATTCAACCCAATGGACTTGATTGGGGTGTTGATTGTGCAGATGTTCCTGTTACGTCAAGGATTCGAGTATTGACGGGGCTTCTTTTGCGGGAAATTAAAGACTTTTGGCCTGTTGCTTTATTGATGGCCACCTTGTTATATCCTGCTAGTGTAGATTATACACAAGATCTGTTAAACAGACACTTCGAACTGGAAAAGCGAAAAGAACTGTTTGACGTCGTTTACAACGAGATTGTTAAATTAGGTATAAACCCAAAAGCTGCTCAGCGAAGCATTATGAAAACAATGCGTTTCCTCGTTCAATCTTTGGCCTCTAACCCTTCTCCTCGGGCACGGCCATGTTTTCAGCAACAAAAAATACTTGCATGGCAGCTTGCACACCCCTCAGCAACATCCGAAGAATGCATCGATTGGATTCGGGAAATGAATTCGAAGCGTGTGCACATAAAGAAAAGATTCATGAAGGAATATAGAGATACAAATGATATTTTGAACCTTGAAATTGTTTTG 6186 43.31 ALTQKQFDSKSQKSSLHFDDEFDTFKLKSVAESLRSATSCETLINSKYSSRLSSSMAMGLEEESERKGGVALYFPANDDEPSSASSSTPPRLPRRLRRRLMESKAPSTAEEIEAKLQKADLRRQAKRQRAGFLMERRRTCDIVHANIKGMPKQDPSAIIASLLSQESVKSMEFEQLASKINATATIQTVRALLVRIESRFTFLKTTSGNKLSFEKVDHLLKRVGLHGRSSNQVTKTSRSETIGSRKAAKVASKLSRYPAKVVLFAYMILAHPETVFIGKSEVENALLESASNFVQEFELLIKVILEGPFRTSHEEQSSTPPSFRSQLEIFDKRWCSYLHHFVVWKDKDAIFFEENMKGVARQLELFMAQTSKLRLEGDNGNIAHDIQVNEEQKMLREKLQQLGSSENSLSVAESSSSELDTEYSTGFRQSESSKSEQRTSSSEMLVTENELVANEIVHDYHHFLTVTSNVPTEAETSLKAKLKKTMEKAFWDGIMESMEEDEPDYSWVVKVLKEIRDELCEMSPLSWRSEIAEKIDIEILAQILNSGTLDVGYFKQLLEFCLVTLRKLSAPAKEKEMEVSYQKLMEELGDVSCSGENSKRSFSLLMVKGLRFVLHQIQNLKEEIANAHLKMVEPLIKGPAGLEYLRSSFSKRCGSPTDAPTSLPLTRQWLSSVWPEVELEWKEYADSVAAAMSKNAVQPEILPSTIRTGGSSKISPTSGIINQITGLSHDTLPETLKLNLARLRMVQSRLQRIIVISTSLLVMRQILLNERLVSSPVEVDSILSTCAKRLCNLLDTVENAGILEIVEAISSVLVDRDSDPEKLQSRKQIIANMLIKSLQEGDVIYTRVSRNIYLAMRGVVLGGSGRKGRQQVEVALLPIGGGALIEKVIEAAEVLVAMAVVSEKRNKPLTNYKTTSLYTSKMNFQCKNVKNALNLLLNNSTFTLRNDFTSHRRFHQFLSLFSLSGERNPAGDRHFRPTMLLKPFNTVAVVFMLAFAFFIIFFTGFLEFPPASTSIVPSTDDLNLSAAEFASDPFTDLITAFKKWDSQVGCDRFREKIGGGLSNGSLSVSLQQVGGDSNSECGGLKLNHVAVLVKGWTWIPDNLDNLYSCSCGLSCLWTKASVLADKPDALFFETSTPPRQFILNPFFDRGDEDCREVKFNGGWDVAVGDPLRIYMDLEAGRKRSGFEDLFVSYHAEDDVQSTYAGALFHNSRNYHDTLVYWSSSRCLPQRNQLARKLLSLLPHHSFGKCLNNVGGLDMALSMYPECANDASVTPKWWDHLHCAMSQYKFILAIENTMTESYVTEKLFYALDSGSVPIYFGAPNVWDFVPPHSIIDGSKFSSLEELASYVKRLADDPVAYAEYHAWRRCRALGNYRRTRAASLDTLPCRWDEFAVQGNEFRAGGSSLSFEVCEKNGRRQLLLLLLYKAMKLLLSFKSPLKLHALILPSLSFHTSFFNFSTPLPALKFPTTRPPSIPSPKSMATSISSPKPLVQVKDTIELTEIEEKIFHRLLGTLRHFNLQTQLRVAGGWVRDKNLGTISWGFGDFFNFIGLLGKDCYDIDIALDNMLGSEFVDKVREYLWTVGEEAQGVAVIPWYENHVNPDQSKHLETARMRIFDIWIDFVNLRCEEYSENSRIPTKQKFGTAEEDAYRRDLTINSLFYNINLSIVEDFTKRGISDLKFGKIVTPLPAKATFMDDPLRVLRAIRARFEFTLDEELKEAAACEEVKAALAAKISRERIGVEIDLMISGNQPVKAMGYICDLTLFWTVFTLPSNTEPEISEVCNRTRKLRQTNASYLMNIYSSTIFLMVHPKKLGLCLSLSHVFGLCIACVDATWNLIPHIKCFTFNDEQKRLSMYASLFLPFRKFTFKDKKSKKIFLSASNSESSALQIPVEIQPNGLDWGVDCADVPVTSRIRVLTGLLLREIKDFWPVALLMATLLYPASVDYTQDLLNRHFELEKRKELFDVVYNEIVKLGINPKAAQRSIMKTMRFLVQSLASNPSPRARPCFQQQKILAWQLAHPSATSEECIDWIREMNSKRVHIKKRFMKEYRDTNDILNLEIVL 2062
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14384684 14406476 - Lsi08G006080.1 Lsi08g00608 668534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00608 2062 Gene3D - 1177 1374 IPR038577 -
Lsi08g00608 2062 PANTHER - 721 903 - -
Lsi08g00608 2062 PANTHER - 63 125 - -
Lsi08g00608 2062 Gene3D Beta Polymerase, domain 2 1491 1679 IPR043519 -
Lsi08g00608 2062 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 1078 1379 - -
Lsi08g00608 2062 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 1216 1370 IPR001503 GO:0006486|GO:0008417|GO:0016020
Lsi08g00608 2062 CDD NT_ClassII-CCAase 1509 1679 IPR002646 GO:0003723|GO:0006396|GO:0016779
Lsi08g00608 2062 PANTHER - 163 427 - -
Lsi08g00608 2062 Pfam T-complex protein 11 453 904 IPR008862 -
Lsi08g00608 2062 Pfam Poly A polymerase head domain 1523 1683 IPR002646 GO:0003723|GO:0006396|GO:0016779
Lsi08g00608 2062 MobiDBLite consensus disorder prediction 73 95 - -
Lsi08g00608 2062 PANTHER TESTIS-SPECIFIC PROTEIN PBS13 T-COMPLEX 11 721 903 IPR008862 -
Lsi08g00608 2062 PANTHER TESTIS-SPECIFIC PROTEIN PBS13 T-COMPLEX 11 432 712 IPR008862 -
Lsi08g00608 2062 PANTHER TESTIS-SPECIFIC PROTEIN PBS13 T-COMPLEX 11 63 125 IPR008862 -
Lsi08g00608 2062 Coils Coil 610 630 - -
Lsi08g00608 2062 SUPERFAMILY Nucleotidyltransferase 1502 1679 IPR043519 -
Lsi08g00608 2062 MobiDBLite consensus disorder prediction 406 443 - -
Lsi08g00608 2062 PANTHER TESTIS-SPECIFIC PROTEIN PBS13 T-COMPLEX 11 163 427 IPR008862 -
Lsi08g00608 2062 PANTHER - 432 712 - -
Lsi08g00608 2062 Gene3D - 1682 1871 - -
Lsi08g00608 2062 Coils Coil 109 129 - -
Lsi08g00608 2062 SUPERFAMILY Poly A polymerase C-terminal region-like 1683 1775 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00847 Lsi-Chr3:13403487 Lsi08g00608 Lsi-Chr8:14384684 2.29E-54 dispersed
Lsi05g00214 Lsi-Chr5:2924983 Lsi08g00608 Lsi-Chr8:14384684 2.33E-12 dispersed
Lsi08g00608 Lsi-Chr8:14384684 Lsi03g00496 Lsi-Chr3:5700301 5.04E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00608 K14412 - csv:101211164 1345.1