Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00609 ATGGAGAAGTGCCCTGTTTATCCTCTTCATTCCCTGTTGATGTTTCTATTCATTTTGAGTCTCTTTGTTCCAAGTCAGCCTCTTCCGACCGAGACTCAAGCATTGCTTCATTTCAAAGAGAATCTCAAAGACCCGACCGGTGTTCTTCATTCTTGGATCGATTCCGAATCTCCTTGTGGATTCTCTGGGATTACTTGTGATCAGGTTTCCGGGAAAGTCGTAGAAATTTCCTTGGAAAACAAGTCGCTTTCTGGTGAGATTTCTCCCTCCATTTCTGTTCTGCAAAGTCTCACAACACTTTCATTGGCCTCAAACCACATTTCTGGGGAGCTTCCCTACCAACTGATCAACTGTAGCAATCTTAGAGTATTGAATCTCACTGATAATGAAATGGTTAGGAGGATTCCTGATCTTTCTCAGCTGAGGAAATTGGAGATTCTAGATCTATCAATCAACTTCTTTTCTGGCCAATTCCCAATCTGGGTTGGAAATTTAACTGGATTGGTTTCTCTGGGACTTGGTGAAAATGAGTTTGAGGCTGGTGAGATACCAGAATCAATTGGAAATTTGAAGAACTTAACTTGGCTATATCTAGCAAATGCACAATTGAGAGGGGAAATACCAGAGTCTCTCTTTGAATTGAAGGCATTAGAGACATTGGATCTTTCAAGGAACAAGCTTTCTGGTAAACTCTCCAAGTCAATATCCAAGTTGCAGAAACTGAATAAGCTTGAGCTTTTTGCTAACAAATTGACTGGAGAAATCCCACCAGAGATTTCAAATCTTACCCTTCTGCAAGAAATTGATATTTCTGCAAATAGTTTGTATGGCCAGTTGCCAGAAGAGGTTGGGAACCTGAGGAATTTGGTGGTTTTTCAGTTGTATGAAAACAACTTCTCTGGAAAGCTTCCTGAAGGGTTTGGAAATATGCAAAACCTTATTGCATTTTCAATCTATAGGAACAATTTTTCTGGAGAATTTCCAGTAAACTTCGGCAGATTCGCTCCGCTCAACAGCATCGACATATCTGAGAACCAATTTTCAGGGAACTTCCCCAAGTTCTTGTGTGAGAATAAGAAGTTGCAGTTCTTACTTGCTCTGGAAAATAGATTTTCAGGTGAGCTGCCACTTTCTTTAGCTGAGTGCAAATCACTGCAAAGATTTAGAATCAATAATAATCAAATGTCTGGCAGGATTCCAGATGGGATATGGGCTCTTCCTAATGCAAAAATGATTGATTTTAGTGACAATGAATTCACTGGAACAATATCCCCAAACATTGGTTTATCTACCAGCTTGAGCCAGTTGGTTTTGCCAAACAATAAGTTTTCAGGTAACCTTCCATCAGAGCTTGGCAAGTTGACAAATTTAGAGAGGCTTTACTTGAGTAATAACGAATTCAATGGAGAAATACCTTCTGACATTGGTTTCCTCAGGCAACTTTCATCATTACACCTGGAAGTAAATTCTTTTAATGGATCGATCCCATTAGAGATTGGTAACTGTGAAAGACTTGTGGACATAAATTTTGCTCAAAACTCTCTTAGTGGTAGCATTCCATCTTCGTTTTCATTAATCAGCTCTTTGAACTCCCTGAACCTCTCAAGCAACAAACTTTCAGGTATAATCCCAGAATCCTTGGAGAAGATGAAGCTAAGTTTGATCGATTTTTCGGGAAATCAGCTGTTCGGGAGAGTTCCATCCAGTCTTCTGGCAATGAGTGGAGACAAAGCATTTTTGGACAACAAAGAACTCTGTGTTGATGAAAACTACAGAGAAAGGATAAATACCAGCCTGGTTACTTGTACTGGAAAGCATAGTCAGAAAGGGGTGCTTAATGATAAACTTGTATTTTTCAGTATCATAGTTTCCATCTTGGTCTGTGTATTAGCAGGGTTAGTGTTGGTAAGTTGTAATTACTTGAAGCTCAGTGCGACTGGCCTAGAGACCGGTCAGGAAGGGGACCGACAAGGAGCTCCAAAATGGAAAATTGCATCATTCCATCAACTGGAAATTGATGCAGATGAAATATGCAACTTTGAAGAAGACAATTTGATAGGGAGTGGAGGAACGGGAAAAGTTTATCGGTTGGATCTCAAGAAAAATGGGGGTACAGTGGCTGTTAAGCAGCTCTGGAAAGGAGATGCAATGAAGGTTTTGGCAGCAGAAATGGAGATTCTGGGAAAGATAAGGCATAGAAACATCTTGAAGCTCTATGCCTGCTTAATGAGAGAAGGATCTAGTTACCTAGTTTTTGAATATATGACCAATGGTAACCTGTATGAAGCACTTCAGAGACAGATCAAAGGTGGACAGCCTGAATTGAACTGGTATCAGAGGTACAAGATTGCATTGGGAGCAGCAAGGGGAATTGCTTACTTGCACCATGATTGTTCACCACCTATAATTCATAGAGATATAAAGTCAACAAACATACTTCTTGATGGAGATTATGAACCAAAAATTGCTGATTTTGGGGTTGCAAAAGTTGCAGATCAGTTTCAAAGTGCTTCTGAGCACAGCTCTCTTGCTGGAACTCATGGTTATATTGCTCCTGAGCTAGCATATACTCCGAAAGTGTCAGAAAAAAGTGATGTGTACAGTTATGGTGTGGTGCTATTAGAATTGATTACAGGAAGGAGACCAATAGAAGATGAATATGGAGAAGGAAAGGATATAGTCTACTGGATCTCAACACACCTTGACGACCGTGATAATGTCCTGAAGCTTCTAGACATCAAAGTTGCATCTGAAGCCGTCCAAAATGACATGATTAAGGTCCTGAAGATTGCTGTACTTTGCACAACAAAGCTTCCATCACTTCGCCCTTCAATGAGAGAGGTAGTGAAGATGCTATCAGATGCTGATCCCTACTCTTCTTCAATGTCCCTGAACAACAGTTCAAATAAAAACATTAAGGATTTTGTTTAG 2931 40.09 MEKCPVYPLHSLLMFLFILSLFVPSQPLPTETQALLHFKENLKDPTGVLHSWIDSESPCGFSGITCDQVSGKVVEISLENKSLSGEISPSISVLQSLTTLSLASNHISGELPYQLINCSNLRVLNLTDNEMVRRIPDLSQLRKLEILDLSINFFSGQFPIWVGNLTGLVSLGLGENEFEAGEIPESIGNLKNLTWLYLANAQLRGEIPESLFELKALETLDLSRNKLSGKLSKSISKLQKLNKLELFANKLTGEIPPEISNLTLLQEIDISANSLYGQLPEEVGNLRNLVVFQLYENNFSGKLPEGFGNMQNLIAFSIYRNNFSGEFPVNFGRFAPLNSIDISENQFSGNFPKFLCENKKLQFLLALENRFSGELPLSLAECKSLQRFRINNNQMSGRIPDGIWALPNAKMIDFSDNEFTGTISPNIGLSTSLSQLVLPNNKFSGNLPSELGKLTNLERLYLSNNEFNGEIPSDIGFLRQLSSLHLEVNSFNGSIPLEIGNCERLVDINFAQNSLSGSIPSSFSLISSLNSLNLSSNKLSGIIPESLEKMKLSLIDFSGNQLFGRVPSSLLAMSGDKAFLDNKELCVDENYRERINTSLVTCTGKHSQKGVLNDKLVFFSIIVSILVCVLAGLVLVSCNYLKLSATGLETGQEGDRQGAPKWKIASFHQLEIDADEICNFEEDNLIGSGGTGKVYRLDLKKNGGTVAVKQLWKGDAMKVLAAEMEILGKIRHRNILKLYACLMREGSSYLVFEYMTNGNLYEALQRQIKGGQPELNWYQRYKIALGAARGIAYLHHDCSPPIIHRDIKSTNILLDGDYEPKIADFGVAKVADQFQSASEHSSLAGTHGYIAPELAYTPKVSEKSDVYSYGVVLLELITGRRPIEDEYGEGKDIVYWISTHLDDRDNVLKLLDIKVASEAVQNDMIKVLKIAVLCTTKLPSLRPSMREVVKMLSDADPYSSSMSLNNSSNKNIKDFV 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14427553 14432388 + Lsi08G006090.1 Lsi08g00609 668535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00609 976 SUPERFAMILY Protein kinase-like (PK-like) 676 952 IPR011009 -
Lsi08g00609 976 SMART serkin_6 680 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00609 976 SUPERFAMILY RNI-like 249 569 - -
Lsi08g00609 976 PRINTS Leucine-rich repeat signature 217 230 - -
Lsi08g00609 976 PRINTS Leucine-rich repeat signature 526 539 - -
Lsi08g00609 976 Gene3D Ribonuclease Inhibitor 315 594 IPR032675 -
Lsi08g00609 976 Gene3D Transferase(Phosphotransferase) domain 1 755 974 - -
Lsi08g00609 976 ProSiteProfiles Protein kinase domain profile. 680 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00609 976 SUPERFAMILY L domain-like 55 300 - -
Lsi08g00609 976 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR2 12 964 - -
Lsi08g00609 976 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524
Lsi08g00609 976 Gene3D Phosphorylase Kinase; domain 1 652 754 - -
Lsi08g00609 976 Gene3D Ribonuclease Inhibitor 28 180 IPR032675 -
Lsi08g00609 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Lsi08g00609 976 Pfam Protein kinase domain 680 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi08g00609 976 ProSiteProfiles Leucine-rich repeat profile. 120 142 IPR001611 GO:0005515
Lsi08g00609 976 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 12 964 - -
Lsi08g00609 976 ProSiteProfiles Leucine-rich repeat profile. 528 549 IPR001611 GO:0005515
Lsi08g00609 976 SMART LRR_typ_2 526 549 IPR003591 -
Lsi08g00609 976 SMART LRR_typ_2 190 214 IPR003591 -
Lsi08g00609 976 SMART LRR_typ_2 94 118 IPR003591 -
Lsi08g00609 976 SMART LRR_typ_2 454 478 IPR003591 -
Lsi08g00609 976 SMART LRR_typ_2 262 286 IPR003591 -
Lsi08g00609 976 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Lsi08g00609 976 Gene3D Ribonuclease Inhibitor 181 239 IPR032675 -
Lsi08g00609 976 Gene3D Ribonuclease Inhibitor 240 312 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00609 Lsi-Chr8:14427553 Lsi08g01054 Lsi-Chr8:19156987 0 dispersed
Lsi08g00609 Lsi-Chr8:14427553 Lsi04g02307 Lsi-Chr4:30266100 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83836 PF00069 Pkinase 1.90E-48 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00609 - - csv:101215749 1748.02