Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00615 ATGATGAACACCATGGGAATCTTTGAAGATATTGGCTTTTGCCGAAATCTTGAATATTTTTCGGCTCCTCCTGGGGAACAAGAGACAGCTCAGGAGCATGAAGCTGAGGCTGCTTTGGAGGAAGATTATAGCGATGAAGAGCTGGATGTTGATGAGCTTGAGAGAAGGATGTGGCGCGACCGAATGCTTTTGAGGCGACTCAAAGAACAAAGCAAAGAGAAGGAAGGCACTGATAATTCAAAGCAGCGTCAATCCCAGGAGCAGGCACGAAGGAAGAAGATGTCTCGAGCTCAAGACGGGATCCTGAAGTATATGTTGAAAATGATGGAGGTCTGTAAAGCTCAAGGATTCGTTTATGGGATTATTCCTGAGAAAGGAAAACCAGTAAGTGGAGCTTCTGATAATCTTCGTGCCTGGTGGAAAGAGAAAGTCAGATTCGATAGAAACGGCCCTGCAGCAATTGCCAAATATCAGGCCGATCATGCGATTCCTGGGAACAACGACGACTGCAACACAGTGGCATCCACTCCTCACACTTTACAAGAGCTCCAAGACACAACCCTTGGATCACTTTTGTCGGCTCTGATGCAGCACTGTGATCCACCTCAGAGGCGTTTTCCGTTGGAGAAGGGAGTTTCCCCACCATGGTGGCCCACCGGAAACGAGGAATGGTGGCCTGAACTGGGACTACCCAAGGACCAGGGGCCACCCCCTTATAAGAAGCCCCATGATCTGAAGAAGGCTTGGAAAGTCAGCGTTCTCACTGCTGTGATTAAGCATATGTCACCCGATATTGCCAAGATTCGCAAGCTTGTTCGCCAGTCCAAGTGTTTGCAAGACAAGATGACTGCAAAGGAGAGTGCTACATGGTTGGCCATTGTAAACCAGGAAGAAGCTTTGGCTAGGAAATTGTATCCTGATAAATGTCCACCCATGTCGATTTGCGGGAGCGGATCTATTTTGATCAGTGACACAAGTGATTACGACGTCGAAGGTGTTGAAGATGAACCAAATGTTGAAGCAGAGGAAAGCAAACCGCACGATCTCAATTTCTTTAATATGGGAGCTCCTGGATCTAGAGAGAGACTTATGATGGCACCTGTTGGAGCTCAGATTAAGGAAGAATTCATGGAGAACAATTCAGACTTCAATCAAAAGAGGAAGCAGATGACAGATGAGTCGAATACAATAATGAATCCGAAGATATATACTTGCGAGTATTCTCAATGCCCTTATAACAGTCAGCGCCTCGGGTTTCTTGACAGGACTTCAAGAAACAACCACCAGTTGAATTGCCCATTTAGGAGTGATTCGTCCCATATATTTAGCATGCCAAGCTTTCAAACTAACGACGACAAATCGTCATCTCCTGTTCCTCCATCCTTTAACCATCCTAAGCCACCTACTCGGCTGATGAACCCAACTCAACCCTTCAGGGTATCAGGACTTGGTCTTCCAGAAGATGGCCAAAAAATGATTTCTGACCTTCTGAGTTTCTACGATTCTAACCTTCAACAGGACAAACCTTTGAATTCCAGTAATGTCGACATGAGAGACGATCACAACCAACAGCAACAACTGCCAAAATTCCAGCTCCAAGTCGACGATAACTTGTATTGTCAAGCAGCAATGGTGGGAAATGGTATACCAATTCAGCAGCAACCTGAATTTTCTTCTACCAAACTTCCATTCGACGAATACAAGGCAGCATTCGATTCTCCGTTCGGCATGTATCCAAATGATAACATTCCCGACTTCAGATTTGGTTCTCCATTTAACTTGGCATCAATTGATTATGCAGCAGTAGACACATCAATTCCCAAACAAGATACACCCTTGTGGTACCTTTGA 1851 45.38 MMNTMGIFEDIGFCRNLEYFSAPPGEQETAQEHEAEAALEEDYSDEELDVDELERRMWRDRMLLRRLKEQSKEKEGTDNSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGNNDDCNTVASTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGNEEWWPELGLPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEEALARKLYPDKCPPMSICGSGSILISDTSDYDVEGVEDEPNVEAEESKPHDLNFFNMGAPGSRERLMMAPVGAQIKEEFMENNSDFNQKRKQMTDESNTIMNPKIYTCEYSQCPYNSQRLGFLDRTSRNNHQLNCPFRSDSSHIFSMPSFQTNDDKSSSPVPPSFNHPKPPTRLMNPTQPFRVSGLGLPEDGQKMISDLLSFYDSNLQQDKPLNSSNVDMRDDHNQQQQLPKFQLQVDDNLYCQAAMVGNGIPIQQQPEFSSTKLPFDEYKAAFDSPFGMYPNDNIPDFRFGSPFNLASIDYAAVDTSIPKQDTPLWYL 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14472422 14474272 - Lsi08G006150.1 Lsi08g00615 668541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00615 616 Gene3D - 175 308 IPR023278 GO:0003700|GO:0005634
Lsi08g00615 616 Coils Coil 373 393 - -
Lsi08g00615 616 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 5 615 IPR006957 GO:0005634
Lsi08g00615 616 MobiDBLite consensus disorder prediction 24 46 - -
Lsi08g00615 616 MobiDBLite consensus disorder prediction 69 94 - -
Lsi08g00615 616 MobiDBLite consensus disorder prediction 443 473 - -
Lsi08g00615 616 Pfam Ethylene insensitive 3 51 298 IPR006957 GO:0005634
Lsi08g00615 616 MobiDBLite consensus disorder prediction 443 459 - -
Lsi08g00615 616 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 5 615 - -
Lsi08g00615 616 Coils Coil 36 70 - -
Lsi08g00615 616 SUPERFAMILY DNA-binding domain of EIN3-like 177 301 IPR023278 GO:0003700|GO:0005634
Lsi08g00615 616 Gene3D - 83 163 IPR023278 GO:0003700|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00444 Lsi-Chr6:4847898 Lsi08g00615 Lsi-Chr8:14472422 0 dispersed
Lsi06g00508 Lsi-Chr6:6119902 Lsi08g00615 Lsi-Chr8:14472422 1.68E-131 dispersed
Lsi07g00166 Lsi-Chr7:1778075 Lsi08g00615 Lsi-Chr8:14472422 4.52E-110 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25745 PF04873 EIN3 3.60E-132 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00615 K14514 - csv:101214396 1154.81