Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00619 ATGGGGATTCAAACTATGGGGTCTCAGGCCGGAGGTGATCCAAATGGCAAACAATCACAATTCCAGCCATTGGTTCGTCAAAATTCACTATATAGTCTCACACTGGATGAGGTCCAAAATCAGTTGGGTGATCTAGGAAAGCCATTAATCAGCATGAACCTTGATGAGCTTCTTAAAAATGTGTGGACTGCTGAGGCCAACCAAACTGTTGGTAAGGACAATGAGGACAATAATGTCTTGGCCAATCAAACATCCCTACAACGTCAGGCTAGTCTTTCATTGAATGGTGCTCTGAGTAAAAAGACTGTCGATGAGGTGTGGAGAGACATTCAACAAAGCAAAGACAGTGAGGAGAAGAAGTCCCGTGAACGGCAACCTACGTTGGGAGAGATGACATTGGAAGATTTTCTGGTGAAAGCAGGGGTGGTTGCTGAGACATCGTCCAATAAAAAAGGTGCCGGTCCTGTTGTTGAAATTGATGCAAATATCACACCCCAGTTTCAACAAACGCAGTGGATGCAGTACCCCCAACCTCAGTATCAGTCTCAACAAGCAGCAATGATGGGGGTTTACATGTCGGGCCAGCCTATTCCCCAGCCACTGCATGTGGGAGGTGGTGCTGTGATGGATGTTCCATACGTAGACAACCAGTTGGCATTGCCAACTCCTTTGATGGGAGCTTTATCTGATACACAGACATCTGGAAGAAAAAGGGGAGCGCCTGAAGACATGATTGAGAAAACTGTCGAGCGTAGACAGAAGAGGATGATAAAGAATCGGGAATCTGCCGCTCGTTCACGAGCAAGGAAGCAGGCATATACCAATGAACTGGAGAATAAAGTTTCACGTTTGGAAGAGGAGAACGAAAGGCTCAGGAAACGGAAGGAGCTGGAAAAGATGCTACCGTTGGCTCCCTCGCCCGAGCCGAAGTATCAGCTTCGAAGAACTTCATCGGCGCCGTTCTAA 966 47.2 MGIQTMGSQAGGDPNGKQSQFQPLVRQNSLYSLTLDEVQNQLGDLGKPLISMNLDELLKNVWTAEANQTVGKDNEDNNVLANQTSLQRQASLSLNGALSKKTVDEVWRDIQQSKDSEEKKSRERQPTLGEMTLEDFLVKAGVVAETSSNKKGAGPVVEIDANITPQFQQTQWMQYPQPQYQSQQAAMMGVYMSGQPIPQPLHVGGGAVMDVPYVDNQLALPTPLMGALSDTQTSGRKRGAPEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKELEKMLPLAPSPEPKYQLRRTSSAPF 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14516717 14522763 - Lsi08G006190.1 Lsi08g00619 668545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00619 321 MobiDBLite consensus disorder prediction 252 321 - -
Lsi08g00619 321 MobiDBLite consensus disorder prediction 1 23 - -
Lsi08g00619 321 MobiDBLite consensus disorder prediction 252 301 - -
Lsi08g00619 321 SUPERFAMILY Leucine zipper domain 251 296 IPR046347 GO:0003700|GO:0006355
Lsi08g00619 321 Pfam bZIP transcription factor 251 298 IPR004827 GO:0003700|GO:0006355
Lsi08g00619 321 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 249 294 IPR004827 GO:0003700|GO:0006355
Lsi08g00619 321 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 4 319 IPR043452 GO:0003700|GO:0045893
Lsi08g00619 321 CDD bZIP_plant_BZIP46 251 305 - -
Lsi08g00619 321 Gene3D - 249 302 - -
Lsi08g00619 321 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 254 269 IPR004827 GO:0003700|GO:0006355
Lsi08g00619 321 PANTHER BZIP TRANSCRIPTION FACTOR 4 319 - -
Lsi08g00619 321 SMART brlzneu 247 319 IPR004827 GO:0003700|GO:0006355
Lsi08g00619 321 Coils Coil 267 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00879 Lsi-Chr3:15212712 Lsi08g00619 Lsi-Chr8:14516717 1.29E-27 dispersed
Lsi04g02359 Lsi-Chr4:30770617 Lsi08g00619 Lsi-Chr8:14516717 4.92E-14 dispersed
Lsi06g00426 Lsi-Chr6:4667200 Lsi08g00619 Lsi-Chr8:14516717 1.06E-82 dispersed
Lsi08g00559 Lsi-Chr8:13775194 Lsi08g00619 Lsi-Chr8:14516717 4.07E-19 dispersed
Lsi08g00619 Lsi-Chr8:14516717 Lsi10g01163 Lsi-Chr10:15906316 3.42E-31 dispersed
Lsi08g00619 Lsi-Chr8:14516717 Lsi03g01900 Lsi-Chr3:30358907 3.81E-15 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25746 PF00170 bZIP_1 3.40E-13 CL0018 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00619 K14432 - csv:101213915 575.474