Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00624 CGGCCGCTACTGATTATATCTCCAAGAACACCCAAGACTGTCTCTCACGATCTACTGAAACCGGAGTTGAATCGACCTGGATTGTTCTTCTCCATGGATTCTCGAAGCCCTAATGAGAATTCACCGAGTACGGAAATGGGTTATCGCTCTTTCTCGCGGCGAAGTCAATCGTCGCTGCAATCGAAGTCCTCAATTCGTGAAGTGGGTTCTAGTGATTTTGGATCGAGGCCTGTTCGTCATGGTTCTCGAGGTGCTGATTCTGAAGCATTGAGCATATCCCAGAAGGAGATCAGTGATGAAGATGCGAGGTTAATTTACATCGATGATCCTGAAAAGACAAACGAGAAGTTTGAATTCGCTAGAAATTCGATTCGCACCGGCAAGTATTCGATTCTTACTTTTCTGCCCAGGAATCTGTTTGAACAATTTCATAGAATTGCTTATATATATTTCCTTGTTATTGCGGTTCTGAATCAACTTCCCCAGCTTGCTGTTTTTGGTCGGGGAGTTTCCATTTTGCCTTTAGCTTTTGTGCTGCTAGTTACTGCATTTAAAGATGCATATGAGGATTGGAGAAGGCATCGTTCTGATAAAATTGAGAACAATAGATTAGCTTCAGTTTTGGTAGACGGTCAGTTTCAACTGAAGAAATGGAAGAATATTAGAGTTGGTGAGATAATTAAGATTGGTGCAAATGACACCATTCCTTGTGATATGGTGCTTCTTTCTACCAGTGATTCCACAGGGGTTGCATATGTGCAAACTCTAAATTTGGATGGGGAATCAAATTTGAAAACCAGGTATGCGAAACAGGAGACGATGTCGAAAATGCCCGACAAGGAGAAGATCGTTGGGTTGATTAAATGTGAGAAACCCAATAGGAATATCTATGGATTTCATGCTAATATGGAGATTGATGGGAAACGTCTTTCTCTTGGACCTCCAAACATAGTTCTTCGTGGCTGTGAGCTCAAGAATACTAGCTGGGCTGTTGGTGTTGCTGTATATGCTGGCCGTGAGACGAAAGCCATGCTTAACAGTTCTGGAGCTCCATCAAAAAGAAGTCGACTCGAGACTCGTATGAATGTGGAGATTGTTATGCTCTCTCTCTTTCTCGTTGCTTTGTGTACTGTTGTTTGTGTTTTGGCTGCTGTTTGGTTCAACAGAAACAGGGATGATTTGGACACTTTACCTTATTTCAGAAATAAGGACTTCTCAGAGGACCCACCTGAAACCTATAATTACTATGGATGGGGATTGGAGGCGTTTTTTGTGTTCCTCATGTCGGTCATTGTGTTCCAGGTCATGATCCCCATTTCACTATACATTTCGATGGAGGTTGTTCGTATTGGCCAGGCTTATTTCATGATCCGAGACACCCAAATGTATGACGAAACATCAAATTCAAGATTTCAGTGTCGGGCTTTGAACATAAATGAGGATTTAGGACAAATAAAGTATGTGTTTTCGGACAAAACGGGTACCCTTACTGAGAATAAGATGGAATTTCAATGCGCAAGCATCTGGGGGGTCGATTATGGAGGTGAAAGTATTAATCCCCTCGACGAGCAGATTGGATACTCTGTTCGAGTAAATGGAAAGGTTTTGAGACCGAAATTGGTTGTCAAAACTGATCCTGAGCTTCTACAGTTGTCGAGAAGTCAAAAGCACACCAAGGATGGAAGATATATTCATGATTTCTTCCTCGCATTAGCTGCTTGCAATACCATCGTTCCTCTCATTACCGAAACTTCTGATCCTTCAGTGCAATTAATTGACTACCAAGGGGAGTCTCCAGATGAACAGGCATTGGTTTATGCTGCTGCAGCATATGGTTTTATGCTAATTGAACGAACTTCTGGCCATATAGTTATTGACATACATGGTGAAAAACAAAGGTATAATGTTTTGGGAATGCACGAGTTTGATAGTGACAGGAAGCGGATGTCGGTGATATTGGGGTGTCCTGATATGACCTTTAAAGTATTTGTAAAAGGTGCTGATAACTCCATGTTCAAGGTGATGGGTGAAAATCTGAACGTGGATATCATTCAAGCGACTAAAGCTCATCTTTATTCATACTCATCAAAGGGTCTCAGAACACTGGTTATTGGGATGAAAGAACTCAGTTCCTCTGACTTTGATAAATGGCACATGATGTTTGAGGAAGCAAGTACCGCTTTGATCGGTAGGGCTGCTAAGCTTCGCAAGGTTGCCAGCAGCGTTGAAAACAATTTGTTGATATTAGGTGCGTCAGGCATTGAAGATAAGTTACAAAAAGGTGTGCCAGAAGCCATAGAAGCTTTAAGAACCGCGGGAATTAAAGTATGGGTTTTGACTGGAGACAAGCAAGAAACTGCCATATCAATAGGCTACTCCTCAAAGCTCTTGACAAACAAAATGACCCAAATTATAATTAACAGCAACTCGGCAGAATCATGCAAAAGGAAATTAGAAGATGCAATAATCATGTCGGAGAAGCTTGCCACTGCCTCAGGCGTTGCACTGGATAATGAAAGAAGCACTGAAGTTGTAACGACTTCGATTGCGTTGATCATTGATGGCAGCAGCCTCGTTCATATTCTTGACAGTAAACTCGAAAAAGAGCTTTTCCAACTATCTTGTAACTGTTCGGTGGTGTTATGTTGTCGAGTCGCCCCATTGCAAAAAGCTGGAATTGTTGCTCTTGTAAAGAGAAGGACTTCTGACATGACACTTGCCATTGGTGACGGTGCGAATGACGTGTCAATGATCCAAAAGGCAGATGTGGGTGTTGGTATCAGTGGTCTAGAGGGTCGACAAGCTGTTATGGCATCAGATTTTGCCATGGGGCAATTTAGATTCTTGGTTCCTCTACTATTGGTCCATGGACATTGGAATTACCAGCGGATGGGCTACATGATCTTGTATGTGCTCTTTACTGGTTACTCGTTGACAACGGCGATCAACCAATGGAGTAGTGTGCTCTACTCTATAATCTATACTTGTTTGCCCACTATTATTGTTGGAATTCTTGACAAGGACTTGGGAAGAAGGACTCTTCTTAGTTACCCTCAGCTCTATGGGGCTGGCCATAGACAAGAAAGCTACAACTCTAGATTGTTTTGGTTAACAATGATTGACACTGTGTGGCAAAGCATTGCTATTTTCTTCATCCCCGTCTTTGCATTTTGGGCTACCACTGTCGACATTTCGGGCCTTGGAGATCTCTGGCTACTCGCTACGGTCATCGTTGTCAACTTACATTTATCAATGGACGTGGTTCGATGGTATACTATCACTCATGCTGTGATCTGGGGATCAACTCTCGCAACCGTCATTTGTGTCATTGTTCTTGATTCGATATTGTCGCTTCCCGGTTACTGGTACGGCGATATATCACGTGGTGGGCACAGCATCTTTTTGGCTATGTTTGTTATCTATCGTCTAGCATTACTTCCTCGTTTTGTCGTAAAATACATTTATCAATATTACTATCCATGTGACATCCAAATAGCAAGAGAGGCTGATAAGTTTGGAAGAACAAGAGAGCTGGGAGTTGTACAAACAGAGATGAGCCCAGTCCTCAACAATCATTTACAAATA 3585 42.29 RPLLIISPRTPKTVSHDLLKPELNRPGLFFSMDSRSPNENSPSTEMGYRSFSRRSQSSLQSKSSIREVGSSDFGSRPVRHGSRGADSEALSISQKEISDEDARLIYIDDPEKTNEKFEFARNSIRTGKYSILTFLPRNLFEQFHRIAYIYFLVIAVLNQLPQLAVFGRGVSILPLAFVLLVTAFKDAYEDWRRHRSDKIENNRLASVLVDGQFQLKKWKNIRVGEIIKIGANDTIPCDMVLLSTSDSTGVAYVQTLNLDGESNLKTRYAKQETMSKMPDKEKIVGLIKCEKPNRNIYGFHANMEIDGKRLSLGPPNIVLRGCELKNTSWAVGVAVYAGRETKAMLNSSGAPSKRSRLETRMNVEIVMLSLFLVALCTVVCVLAAVWFNRNRDDLDTLPYFRNKDFSEDPPETYNYYGWGLEAFFVFLMSVIVFQVMIPISLYISMEVVRIGQAYFMIRDTQMYDETSNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYGGESINPLDEQIGYSVRVNGKVLRPKLVVKTDPELLQLSRSQKHTKDGRYIHDFFLALAACNTIVPLITETSDPSVQLIDYQGESPDEQALVYAAAAYGFMLIERTSGHIVIDIHGEKQRYNVLGMHEFDSDRKRMSVILGCPDMTFKVFVKGADNSMFKVMGENLNVDIIQATKAHLYSYSSKGLRTLVIGMKELSSSDFDKWHMMFEEASTALIGRAAKLRKVASSVENNLLILGASGIEDKLQKGVPEAIEALRTAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQIIINSNSAESCKRKLEDAIIMSEKLATASGVALDNERSTEVVTTSIALIIDGSSLVHILDSKLEKELFQLSCNCSVVLCCRVAPLQKAGIVALVKRRTSDMTLAIGDGANDVSMIQKADVGVGISGLEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRMGYMILYVLFTGYSLTTAINQWSSVLYSIIYTCLPTIIVGILDKDLGRRTLLSYPQLYGAGHRQESYNSRLFWLTMIDTVWQSIAIFFIPVFAFWATTVDISGLGDLWLLATVIVVNLHLSMDVVRWYTITHAVIWGSTLATVICVIVLDSILSLPGYWYGDISRGGHSIFLAMFVIYRLALLPRFVVKYIYQYYYPCDIQIAREADKFGRTRELGVVQTEMSPVLNNHLQI 1195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14590144 14594596 + Lsi08G006240.1 Lsi08g00624 668550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00624 1195 Gene3D - 745 948 IPR023214 -
Lsi08g00624 1195 PRINTS P-type cation-transporting ATPase superfamily signature 489 503 - -
Lsi08g00624 1195 PRINTS P-type cation-transporting ATPase superfamily signature 908 927 - -
Lsi08g00624 1195 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 878 1001 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi08g00624 1195 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 421 510 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi08g00624 1195 Gene3D - 175 346 - -
Lsi08g00624 1195 Gene3D - 592 726 IPR023299 GO:0000166
Lsi08g00624 1195 SUPERFAMILY HAD-like 476 949 IPR036412 -
Lsi08g00624 1195 Pfam Phospholipid-translocating ATPase N-terminal 105 170 IPR032631 -
Lsi08g00624 1195 ProSitePatterns E1-E2 ATPases phosphorylation site. 491 497 IPR018303 -
Lsi08g00624 1195 SUPERFAMILY Calcium ATPase, transduction domain A 202 343 IPR008250 -
Lsi08g00624 1195 SFLD p-type atpase 473 959 IPR044492 -
Lsi08g00624 1195 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 34 1191 - -
Lsi08g00624 1195 CDD P-type_ATPase_APLT_Dnf-like 121 1053 - -
Lsi08g00624 1195 MobiDBLite consensus disorder prediction 31 70 - -
Lsi08g00624 1195 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 34 1191 - -
Lsi08g00624 1195 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 1160 IPR023298 -
Lsi08g00624 1195 MobiDBLite consensus disorder prediction 29 91 - -
Lsi08g00624 1195 Pfam Cation transport ATPase (P-type) 597 673 - -
Lsi08g00624 1195 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 119 1168 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Lsi08g00624 1195 Pfam Phospholipid-translocating P-type ATPase C-terminal 936 1160 IPR032630 -
Lsi08g00624 1195 SFLD Haloacid Dehalogenase 473 959 - -
Lsi08g00624 1195 Pfam E1-E2 ATPase 205 447 - -
Lsi08g00624 1195 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 495 762 IPR023299 GO:0000166
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01619 Lsi-Chr1:14561706 Lsi08g00624 Lsi-Chr8:14590144 0 dispersed
Lsi04g00308 Lsi-Chr4:3125165 Lsi08g00624 Lsi-Chr8:14590144 0 dispersed
Lsi08g00624 Lsi-Chr8:14590144 Lsi09g01091 Lsi-Chr9:17328856 0 dispersed
Lsi08g00624 Lsi-Chr8:14590144 Lsi02g00155 Lsi-Chr2:1273764 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00624 K14802 - csv:101212953 2178.67