Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00659 ATGGCGTCTTCTTCTTCTTTCTCCGATCACTACCTCCAACTTTTCTTCTCACTAATGGCCGTTGCCCTCTCTGCATTCATCTTCTTTCTCAACCAAAAACGCACCTCTAAGCCACAACTCAACCTCCCGCCGGGACCCCGCGGCTGGCCGGTCGTTGGAAACCTCTTCCAGGTCGCTCGCTCCGGCAAGCATTTCTTCGAATACGTTGAAGACATCCGCCAGATTTACGGCCCAATCTTCACTCTCCAGATGGGCTCTCGCACCATGATCATCTTGTCCGGCGCCGATCTCATTCACGAAGCCTTAATCAAGCGCGGCCCTACTTTCGCCAGCCGCCCTGCTGAGAATCCCACTCGAATCATCTTCAGCAGCAACAAATTCTCCGTCAACGCCGCCGTTTACGGCTCCCTCTGGCGCTCCCTCCGCCGAAACATGGTCGAGAACATGCTCTCTTCTAGCCGCTTGAAGGAGTTTCGCGACGTCAGAAAAAACGCCATGGATAAGCTCGTTCAACGCATTAGAATCGACGCCGCCGCCAACGGCGGCGCCGTTTGGGTGTTGAAAAACTCTCGATTCGCTGTGTTTTGTATTCTCTTGGCGATGTGCTTCGGATTAGAAATGGAGGAGGAATCGGTTGAGAAAATGGATCAAGTTCTTAAAACTGTTCTGATCACCGTCGATCCGAGAATCGACGATTTTCTTCCGATTTTGAGGCCTTTTTTCTCCAAACAGAGGAAACGCGCCATGGAAGTGAGAACAGAGCAAATCGAATTCGTCGTACAGTTCATCAATCGAAGGAAAAAAGCACTTCAAAATCCAGGTTCAGACATTAACGCAACTTCATTTTCGTACCTCGATACGCTCTTCGATCTCAAGGTCGACGGCCGGAAATCTTCCCCGACGGACGCCGAATTAGTCACTCTCTGCTCTGAATTCCTCAACGGCGGCACTGACACGACGGCAACCGCCATCGAATGGGGAATCGCAGAGCTAATCACAAACCCTAACATCCAGAAAAAGCTACACGAAGAAATCAAGCAATTAGTAGGCGATAGAAAAGTAGACGAATCTGATATTGAGAAATTGCCTTATCTTCAAGCGGTAGTGAAGGAATTGCTGAGAAGGCACCCGCCGACGTACTTTACGCTAACACATTCGACGGTCGAGGCGACAAAATTGGCCGGATACGACATTCCGATGGAGGCGAGTGTGGATGTTTACTTGGCCGGAATCAGCAACGATCCGAAACTATGGAAGAATCCGGAGAAATTCGAGCCGGAGAGATTCATGTCCGGCGAGGAAGAGGTTGATATGACGGGGATTAAAGGAATGAAAATGATTCCGTTCGGAGTTGGACGGAGAATTTGCCCTGGTTTGGGAATGGCGACGATTCACGTTCATCTTATGCTGGCGAGGTTGGTTCAGGAATTCGAATGGAGTTCATATCCGCCGAACAGTGAATTGGATTTTACGAAGAAGTATGAATTTACTGTTGTGATGAAGAATTCTCTCAGAGCCATTGCCACAACCAGAGCTTGA 1539 49.51 MASSSSFSDHYLQLFFSLMAVALSAFIFFLNQKRTSKPQLNLPPGPRGWPVVGNLFQVARSGKHFFEYVEDIRQIYGPIFTLQMGSRTMIILSGADLIHEALIKRGPTFASRPAENPTRIIFSSNKFSVNAAVYGSLWRSLRRNMVENMLSSSRLKEFRDVRKNAMDKLVQRIRIDAAANGGAVWVLKNSRFAVFCILLAMCFGLEMEEESVEKMDQVLKTVLITVDPRIDDFLPILRPFFSKQRKRAMEVRTEQIEFVVQFINRRKKALQNPGSDINATSFSYLDTLFDLKVDGRKSSPTDAELVTLCSEFLNGGTDTTATAIEWGIAELITNPNIQKKLHEEIKQLVGDRKVDESDIEKLPYLQAVVKELLRRHPPTYFTLTHSTVEATKLAGYDIPMEASVDVYLAGISNDPKLWKNPEKFEPERFMSGEEEVDMTGIKGMKMIPFGVGRRICPGLGMATIHVHLMLARLVQEFEWSSYPPNSELDFTKKYEFTVVMKNSLRAIATTRA 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14933121 14934659 - Lsi08G006590.1 Lsi08g00659 668585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00659 512 SUPERFAMILY Cytochrome P450 43 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00659 512 Gene3D Cytochrome P450 28 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00659 512 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506|GO:0016705
Lsi08g00659 512 Pfam Cytochrome P450 43 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00659 512 PANTHER CYTOCHROME P450 77A4 6 509 - -
Lsi08g00659 512 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 6 509 - -
Lsi08g00659 512 PRINTS P450 superfamily signature 315 332 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00659 512 PRINTS P450 superfamily signature 456 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00659 512 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00659 512 PRINTS P450 superfamily signature 367 378 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00659 512 PRINTS E-class P450 group I signature 193 211 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00659 512 PRINTS E-class P450 group I signature 407 431 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00659 512 PRINTS E-class P450 group I signature 73 92 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00659 512 PRINTS E-class P450 group I signature 304 321 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00659 512 PRINTS E-class P450 group I signature 324 350 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00659 512 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00659 512 PRINTS E-class P450 group I signature 97 118 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00659 512 PRINTS E-class P450 group I signature 366 384 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi08g00659 512 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00659 Lsi-Chr8:14933121 Lsi10g00252 Lsi-Chr10:4108716 1.06E-45 dispersed
Lsi01g00414 Lsi-Chr1:3534613 Lsi08g00659 Lsi-Chr8:14933121 2.11E-163 transposed
Lsi09g00055 Lsi-Chr9:458086 Lsi08g00659 Lsi-Chr8:14933121 2.34E-115 transposed
Lsi09g01787 Lsi-Chr9:26611497 Lsi08g00659 Lsi-Chr8:14933121 2.43E-97 transposed
Lsi10g00220 Lsi-Chr10:3560152 Lsi08g00659 Lsi-Chr8:14933121 9.35E-94 transposed
Lsi04g00133 Lsi-Chr4:1537748 Lsi08g00659 Lsi-Chr8:14933121 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00659 K21995 - csv:101206763 926.391