Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00688 ATGCTGTCGATTCATTCAAAAGGACAATCCAATTCCTGTCAAACCGGAAACCCTATCGACGATTGTTGGCGCTGTGACTCCAACTGGCAAGCCAATCGCCAACGACTCGCCGATTGCGGCATTGGATTCGGCCGAGACGCCATGGGAGGAAAAGGAGGTCAGATCTACGTAGTTACAGATTCCTCCGATTCCGACCCTGTAAACCCTCGCCCTGGAACTCTCCGCTACGCCGTGGTTCAAGATGAACCTCTCTGGATTGTCTTTGCTGCAGATATGACAATCAAACTCAAATACGAACTCATGTTGAACAGTTACAAAACCCTAGATGGCCGAGGCGCCAATGTCCACATTACCGGCGGCGGTTGCGTCACACTCCAATACATCTCGAATATAATCATCCACAACATCAACATCCACCACTGTATTCCTACCGGCCACACCAACATCAGATCGTCTCCTACGCACGTCGGATACAGAGGAAAGTCCGACGGCGACGGAATCTCGATCTTTAGCTCGCGCAACATCTGGATCGATCATTGCTCGCTCTCATACTGTACCGATGGCTTAATCGACGCCATAATGGGATCGACCGGAATCACGATCTCGAACAACTACTTCTCCCACCACGACGAGGTGATGTTGCTAGGGCATGACGACGGTTTCACGCCGGACTCGGGGATGCAGGTGACGATTGCGTTCAATTTGTTCGGCGAGAAGCTCGTTCAGAGGATGCCGCGGTGCCGACGGGGATACATTCACGTTGTCAACAATGACTTCCGATCGTGGGAGATGTACGCCATCGGCGGCAGCGGTAATCCAACGATCAACAGCCAAGGAAATCGGTATATTGCTCCGGGAAATCCCAATGCGAAGGAGGTGACGAAGCGCGTGGACACAAACGCGGGGGATTGGTCGGAATGGAACTGGAGGACGGAAGGGGACATAATGGTAAATGGAGCATTTTTTGTGCCCTCCGGCGAAGGACTGAGCAATATGTACGTTAAAGCTTCCAGTTTGCCGCCCAAATCCGCCGCTCTTGTCGACCAACTCACTCTCAACGCCGGCGTCTTCGGCGGCTCCAGGGAGAGTAGACAGAGCAACACATATCCTGGAGACGAAAGCTCCTCCAGTTCGGGGTCCCGTGGCAGCGATGGCGGTGGTGACTACTTTGGGATGATATTTGGTGGGGGCGGGATTAACAGTGCACCACCACCATCTCTTTCAGTTGTTAACTTGTTCATTCTAACTCTGTTTACTGTTTTAGTTCTGTACACGAACTGGAACTACGGTTCTTTATTATCATTAACAACATTGTCATTGTAG 1323 51.55 MLSIHSKGQSNSCQTGNPIDDCWRCDSNWQANRQRLADCGIGFGRDAMGGKGGQIYVVTDSSDSDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMLNSYKTLDGRGANVHITGGGCVTLQYISNIIIHNINIHHCIPTGHTNIRSSPTHVGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDGFTPDSGMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNDFRSWEMYAIGGSGNPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLSNMYVKASSLPPKSAALVDQLTLNAGVFGGSRESRQSNTYPGDESSSSSGSRGSDGGGDYFGMIFGGGGINSAPPPSLSVVNLFILTLFTVLVLYTNWNYGSLLSLTTLSL 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15184400 15190273 + Lsi08G006880.1 Lsi08g00688 668614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00688 440 SUPERFAMILY Pectin lyase-like 17 356 IPR011050 -
Lsi08g00688 440 MobiDBLite consensus disorder prediction 358 383 - -
Lsi08g00688 440 PRINTS Pollen allergen Amb family signature 336 359 IPR018082 -
Lsi08g00688 440 PRINTS Pollen allergen Amb family signature 39 56 IPR018082 -
Lsi08g00688 440 PRINTS Pollen allergen Amb family signature 163 184 IPR018082 -
Lsi08g00688 440 PRINTS Pollen allergen Amb family signature 307 331 IPR018082 -
Lsi08g00688 440 PRINTS Pollen allergen Amb family signature 99 115 IPR018082 -
Lsi08g00688 440 PRINTS Pollen allergen Amb family signature 63 88 IPR018082 -
Lsi08g00688 440 PRINTS Pollen allergen Amb family signature 243 262 IPR018082 -
Lsi08g00688 440 PRINTS Pollen allergen Amb family signature 265 284 IPR018082 -
Lsi08g00688 440 PANTHER PECTATE LYASE 18-RELATED 1 376 IPR045032 GO:0030570
Lsi08g00688 440 Pfam Pectate lyase 99 280 IPR002022 -
Lsi08g00688 440 PANTHER PECTATE LYASE 1 376 - -
Lsi08g00688 440 Gene3D - 16 358 IPR012334 -
Lsi08g00688 440 SMART amb_all 91 288 IPR002022 -
Lsi08g00688 440 MobiDBLite consensus disorder prediction 358 384 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00688 Lsi-Chr8:15184400 Lsi09g01161 Lsi-Chr9:18677108 3.43E-177 dispersed
Lsi04g00102 Lsi-Chr4:1154248 Lsi08g00688 Lsi-Chr8:15184400 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00688 K01728 - csv:101207535 808.905