Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00715 ATGGAATTCCATCCGGAAAATGGCAACCATGGATGGCCGAAGGAGCCCTCTTTGTGCGGTGGCGTGGCGGCGTATTGGAGCGGTGCGGCGGAGGGGCTCGAGCGGAGTCATTTGGAGGAGTTTAAACATATGGTGGCAGAATTTTGTCGCCCTATTGTACGACTTGGGGGCGAGAGCCTCACGATAGCGCAAGTTGCTGCCATTGCTGCTCGTGCCTCTGATGTTGTGGTGGAGCTGTCTGAGGAAGCTCGCCCTGGTGTAGAGGCGAGTAGTAGGTGGGTTGTTAAAAGCATGACTAATGGAACCGATAGTTATGGTGTTACGACTGGTTTTGGTTCTACGTCGCATCGAAGGACTGACCAAGGAGAAGCCCTTCAGAAAGAGCTCATTAGATTCTTAAATGCGGGAATTTTCGGAAAAGATCCAAATTCTTGCCATACATTATCACAACAAGCCACTAGAGCTGCTATGGTGGTGAGAATCAACACACTCTTGCAAGGTTATTCTGGCATTAGGTTTGAAATTTTGGAAGCCATAACTAAATTACTCAACCACAACATAACTCCATGTCTCCCTCTTAGAGGTACCATCACAGCATCTGGTGACCTAGTTCCTCTTTCATACATTGCTGGACTTTTGACGGGAAGACCTAATTCTAAGGCCATTGGGCCTAATGGTGAATCTCTTAATGCAATTGAGGCATTCGATCTCGCTGAGATTAGTAGTGGTTTCTTCGACTTGCAGCCTAAAGAAGGCCTTGCTCTTGTCAATGGCACTGCAGTTGGTTCAGGCTTGGCTTCCATGGTTCTATTTGAAGCTAACTTTCTTGCTATCCTTTCTGAGATTTTGTCAGCAATTTTTGCTGAAGTTATGCAAGGAAAACCTGAGTTTACAGATCATTTGACTCATAAGTTAAAACACCATCCTGGTCAGATTGAAGCAGCAGCAATTATGGAGCATATATTGGATGGAAGTTCTTATGTCAAAACTGCTAAAAAATTGCACGAAACTGATTCACTTCAAAAGCCTAAACAAGATCGATATGCTCTTAGAACTTCTCCTCAATGGCTCGGTCCTCAAATTGAAGTCATTAGATACTCCACCAAAATGATTGAACGTGAGATTAACTCAGTGAACGATAACCCACTGATTGACGTGTCGAGAAATAAGGCTTTGCATGGAGGAAATTTCCAAGGCACTCCCATTGGTGTCTCCATGGATAACACTCGTTTAGCCATTGCTTCTATTGGTAAACTCATGTTTGCACAATTCTCAGAACTTGTCAATGACTTCTACAATAATGGGTTACCTTCAAATCTCTCTGCTAGTAGAAACCCAAGTTTGGATTACGGGTTCAAAGGTGCTGAGATTGCAATGGCTTCATATTGCTCTGAGCTTCAATACTTGGCAAATCCTATAACCAATCATGTCCAAAGTGCCGAACAACATAACCAAGATGTAAACTCATTGGGGTTGATATCGTCGAGAAAAACAGCTGAGGCTATTGAGATTTTGAAGCTTATGTCTACTACTTACTTGGTGGCATTATGCCAAGCTATTGATTTAAGACACATGGAGGAAAATTTGAAGAAAACAGTAAAGAACACTGTTAGCCAAGTGGCAAAAAAGATCCTTGTGTTGAACTTTGATGGCAATCTCCATCCAATTAGGTATAGTGAAAAGGATTTGCTTCAAGTCGTGGATAGAGAACACGTTTTTGCCTATATTGATGACCCTTGCAGTGCTTCATATCCATTGATGCAAAAGCTAAGACAAGTATTGGTGGATCATGCCCTAAAAAATGGTGAAAGAGAAAGCAACCCAAGTGCTTCAATCTTCCAAAAAATTACAGCTTTTGAAGATGAATTAAAAGCACTTTTGCCTAAAGAAGTGGAAAATACAAGAATGGAAGTGGAAAAAGGGAGCCCTACCATTGAAAACCAAATTAAAGAATGCAGATCTTATCCATTGTACAAGTTCGTCAGAGAAACGGTGGGGACTCGATTATTAACCGGTGAGAAGGATGTATCGCCCGGAGAAGAATTTGATAAGATTTTTTCAACCATTTCTGCAGGAAAACTGATAGATCCAATGCTTGAGTGTTTGAAGGATTGGAATGGTGCTCCGCTTCCTCTTAGTTAG 2142 42.25 MEFHPENGNHGWPKEPSLCGGVAAYWSGAAEGLERSHLEEFKHMVAEFCRPIVRLGGESLTIAQVAAIAARASDVVVELSEEARPGVEASSRWVVKSMTNGTDSYGVTTGFGSTSHRRTDQGEALQKELIRFLNAGIFGKDPNSCHTLSQQATRAAMVVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGESLNAIEAFDLAEISSGFFDLQPKEGLALVNGTAVGSGLASMVLFEANFLAILSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKTAKKLHETDSLQKPKQDRYALRTSPQWLGPQIEVIRYSTKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPITNHVQSAEQHNQDVNSLGLISSRKTAEAIEILKLMSTTYLVALCQAIDLRHMEENLKKTVKNTVSQVAKKILVLNFDGNLHPIRYSEKDLLQVVDREHVFAYIDDPCSASYPLMQKLRQVLVDHALKNGERESNPSASIFQKITAFEDELKALLPKEVENTRMEVEKGSPTIENQIKECRSYPLYKFVRETVGTRLLTGEKDVSPGEEFDKIFSTISAGKLIDPMLECLKDWNGAPLPLS 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15470881 15476143 - Lsi08G007150.1 Lsi08g00715 668641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00715 713 Pfam Aromatic amino acid lyase 60 536 IPR001106 -
Lsi08g00715 713 PANTHER HISTIDINE AMMONIA-LYASE 25 712 IPR001106 -
Lsi08g00715 713 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 25 712 - -
Lsi08g00715 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Lsi08g00715 713 CDD PAL-HAL 77 523 IPR001106 -
Lsi08g00715 713 Gene3D - 21 259 IPR024083 -
Lsi08g00715 713 SUPERFAMILY L-aspartase-like 25 712 IPR008948 GO:0003824
Lsi08g00715 713 Gene3D - 526 647 IPR023144 -
Lsi08g00715 713 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 25 703 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lsi08g00715 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00715 Lsi-Chr8:15470881 Lsi01g01331 Lsi-Chr1:11504847 0 dispersed
Lsi01g01328 Lsi-Chr1:11489995 Lsi08g00715 Lsi-Chr8:15470881 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00715 K10775 - csv:101206890 1302.35