Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi08g00720 | ATGAATAGAGGAATGGATTCAGTGATTGATCCAATGATGAACCATGACAAGCATTTAGATTCTCAGCTATGGCATGCCTGTGCTGGTGGGCTGATTCAATTGCCCACCATTAACTCAAAGGTGGTCTACTTCCCCCAGGGCCACGCTGAGCATGCCCAGGGGAATGTCGATTTCGGGAATGCTCGAATTCCTTCACTCATTCCTTGCAGGGTATCTTCCATAAGACATATGGCAGATCCTGAAACTGATGAGGTTTTTGCTAAGATAAAGTTGGCTCCAATGGGGAACAATGAATTCAGTTTGGATAATGATGATGAGCTTCTAGGCCACAATGAAATTAGGAGTCAGGAGAAACCTACCTCCTTTGCTAAGACATTGACCCAATCTGATGCAAACAATGGTGGAGGATTCTCTGTGCCTCGTTATTGCGCTGAGACGATCTTTCCTCGGTTGGATTACTCGGTAGAGCCTCCTGTTCAGACCATTCTTGCCAAGGATGTTCATGGTGAGATTTGGAAGTTTAGGCATATATATAGAGGAACTCCACGTCGCCATCTTTTGACGACTGGGTGGAGTAATTTTGTGAATCAGAAGAAACTTGTTGCTGGGGACTCAATTGTTTTCTTGAGGGCAGAAACTGGCGATCTTTGTATTGGAGTTAGACGAGCCAAGAGGGGAATTGGTTGTGGAATTGATTACTCACCTGGCTGGAACCCAACTAATTCAGGCCCTCCACTTGTGGGGTTTTCTGATTTTATGAGGGAGAATGAAGGTAGATTGGTGAGAAGAAACTCAAATGGGAATCTGAGCGGGAGAGTGAAGGTAGAATCCGTCATTGAAGCTGCAATGCTTGCTGCCAGTGGCAAGCCGTTTGAGATTGTGTACTACCCATGTGCTGGTACTCCAGAGTTTGTTGTTAAGGCCTCTGATTTAAGATCTGCAATGCAAATTCACTGGTATTCTGCTATGAGATTCAAGATGCCTTTTGAAACCGAGGATTCATCTCGGATAAGCTGGTTTATGGGAACTATATCTGCTATCCAGGTAGCTGATCCTATTCGGTGGCCTGATTCTCCATGGCGAATGTTGCAGGTGACATGGGATGAGCCAGATTTACTGCAAAATGTGAAGAGTGTCAACCCATGGTTGGTTGAAGTGGTAGTAAATATGCCAGCTATCCATGTCTCCCCCTTCTCGCCACCGAGAAAGAAGCCACGTTTTCCACTTCCAGCAGAAACTTCTGTATTTGGTCACCTTCCAATGCCGTCGTTTTCCACCAATATCTTTGATACAACCAACCCCTTACAAAGTATTACAGCTAACAAAATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCACCCAACCTCCAAATCAGCAAACCGCATTTGGGACAATTTTCCCCTGGTTTAAAGCACCTTGATGACGCCACTCCTCTTCCTGGCATCCGAAGCGAAGATATTTTTGGAGGCATGAAAAACCCTGATAATCGTTCTCACTGGCTAACAATGGGAAATCATATCCAAAGCTCAAAAGAAAGCTCAAAGGAAAGCTCGAAAGAAAGCAAAGAAACGAAACCAACTCATATCATATTGTTTGGCCAACTCATTTTTCCTAACCAACAGGTTTCTAACAGTTGCTCTGGAGATACGACGAATGCATCAGATGCAAATCAAGAGAAAGCATCAAATCTTTCTGACGGTTCTGGTTTGTCATCCCAACAAAATGGTTCGCTGGAGAATTCATCAGAGGGAGGATCTACCTCGTACAACGGTCAGGACAAAACCGGTCTTAGCTTGGACACTGGTCATTGCAAAGTGTTTATGGAGTTGGAGAATGTTGGTCGTACTCTTGATCTAACAGCTCTCAGGTCGTACGAAGAATTGTATAGAAAATTGGGCAATATTCTTGGTTTAAGAAGCTCAGAGATGCTGAATTCTGTTCTTTATCAGGATGCACTTGGCGCTACAAAGCATGTTGGAGAAGAGCCTTTCAGGAGTTGGGAAGAGCAGGAGAAAGGAGTGGCCATAGTGAACAGGATGAAAAGAAAACATCATACTAATATGATCCTTGTAGATATTGTACCATTTCTGAATCCGAATCTTCTCAGCTCTAGTCCCAGTCTGGGCAGCCACGAGCTTCTTCAAGTCGCCGATGGTGTCGTCGTCGTTGCACTTCACTCTCACCTTCTTCCCCAACCGATCATTCAGCACCACCTCGATCATCTTCTTCTTTCTTCTCTCTCCCAAGAAAAGCAAAACCCTAGGTCGTCTCAGAGTTCAACGGAGCAAAATGCAAAATTAAAGAGAAAATTTTTGCGCTCATGCGGTTCCAATCCTGGGAACTACTATGCAATTGATGGTAATCGAATCGGGGATAAATCTGTTGTTCTATTTATCAAACCAGTCGATGTTGAGTTCATTTCCAAATTAAACGAAGAGTTGAATACAAAAAAGACTACAATTTCAGGGAAGGTTTTCCAAAATATTAATGTATCACAGTGCTACCACCAGTCTAGGCAGTTCAGCAACCAATATCGAAGGGACTGTTTTGCCCCTTTTAACTTGCTTCCCTTTGATGGAGGGAAGGTTGCATGGACTGGCATCTCATCCATGCAGTTGCGCACCTTTTCCACACCCCAGATAAATTTTATTATTCGAGGACCTGTTCACTGCAATGCATTGCCATCTGATCCATACTTGTCTTCTGATCTTGTTGCAGCTGTTCCATCTACAATCTCTTCTCTCGATAATATTGATTTCCAGAAGCTTCAAAATGGAAGTGATATTCGAGGTGTTGCTGTTGCTGGTGTTGAGGGAGAGCCCGTGAATCTTACTGAACTAGTTGCAGAAGCAATAGGAGCTGGCTTTGCTGCATGGTTGTTAGAAAAGAAAAAAGCTGATGGTTCGCGACGGTTGAGAGTTTCTATTGGACATGATTCACGAATATCAGCTAAAAAGTTACAGGATGCAATTTCTCAAGGTATAGCTGGTGCAGGGCTGGATGTTATTCAATATGGATTAGCTTCTACACCAGCTATGTTTAACAGCACTCTTACGGAAGATGAAGCACTTTTTTGTCCTGCTGATGGATCTATTATGATAACTGCAAGTCATTTGCCGTTCAACAGGAATGGATTCAAATTTTTTACTAATGCTGGTGGGCTTGGCAAAGCTGACATTAAAGAAATTCTGGGGCGTGCTGCAGAATTCTATAGAAATCTGAATAACACAGATGGTTTGATAAATTCAAGGGGGAAAGGTTCTGCAACAATAGAGCAGGTCGATTACATGAGCGTCTATGCATCTGATCTTGTGAAGGCAGTTCGTAAAGCTGCAGGAAATAAAGATAAGCCCTTGGAAGGATTCCATATTGTTGTTGATGCTGGAAACGGAGCAGGGGGGTTTTTTGCAGCAAAGGTGCTTGAACCACTTGGTGCAATCACTTCGGGTAGTCAGTTCTTGGAGCCGGATGGTTTATTTCCAAACCATATCCCAAATCCTGAGGACAAGACAGCAATGAAAGCCATAACAGAGGCTGTCCTTCACAACAAAGCTGATTTAGGGATCATCTTTGACACAGATGTTGACAGATCTGCTGCTGTGGATTCTACTGGACGTGAGTTTAACCGGAATCGCCTAATTGCCTTGATGTCTGCCATTGTTCTTGAGGAGCATCCTGGAACAACTATTGTTACAGACAGTGTGACTTCTGATGGCCTAACCTTGTTTATAGAGAAGAAACTTGGTGGAAAACATCACAGGTTCAAAAGAGGCTACAAAAATGTTATTGATGAAGCTATCCGTTTGAATTCTATTGGTGAGGAGTCACATTTGGCTATTGAAACCAGTGGTCATGGAGCTCTTAAGGAGAACCATTGGCTTGATGATGGCGCATATCTCATGGATGAATCTCAGGTAAAAATTTTGAACAAACTTGCATCAGCAAGAGCCTCAGGATTGGGTGGTGGAAGCCAAGTTTTGACTGATCTGGTGGAAGGTTTACAAGAGCCTGCCGTTGCTGTCGAGTTGCGATTAAAAATAAATCAAAACCATCCAGACCTTCAAGGAAGACCCTTCCGTGATTATGGTGAAGCAGTGCTGAAACATGTTGAGAATCTTGTTGCTTCTGATTCCAAGCTTCTGAAAGCTCCTGTCCGGGTTTCGGGATTTGGCGGGTGGTTTCTTCTGAGACTCTCATTGCATGATCCTGTACTTCCTCTTAACATAGAGGCGCCAAGCAATGACGACTCCATAAAACTCGGCCTTGCAGTCCTAGCTGCTGCCAAGGAATTCCCTGCTTTGGATACGTCTGCACTAGACAAATTCGTTCAAGTATGA | 4356 | 43.78 | MNRGMDSVIDPMMNHDKHLDSQLWHACAGGLIQLPTINSKVVYFPQGHAEHAQGNVDFGNARIPSLIPCRVSSIRHMADPETDEVFAKIKLAPMGNNEFSLDNDDELLGHNEIRSQEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSVEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAETGDLCIGVRRAKRGIGCGIDYSPGWNPTNSGPPLVGFSDFMRENEGRLVRRNSNGNLSGRVKVESVIEAAMLAASGKPFEIVYYPCAGTPEFVVKASDLRSAMQIHWYSAMRFKMPFETEDSSRISWFMGTISAIQVADPIRWPDSPWRMLQVTWDEPDLLQNVKSVNPWLVEVVVNMPAIHVSPFSPPRKKPRFPLPAETSVFGHLPMPSFSTNIFDTTNPLQSITANKIPAGIQGARHTQFGLSSPNLQISKPHLGQFSPGLKHLDDATPLPGIRSEDIFGGMKNPDNRSHWLTMGNHIQSSKESSKESSKESKETKPTHIILFGQLIFPNQQVSNSCSGDTTNASDANQEKASNLSDGSGLSSQQNGSLENSSEGGSTSYNGQDKTGLSLDTGHCKVFMELENVGRTLDLTALRSYEELYRKLGNILGLRSSEMLNSVLYQDALGATKHVGEEPFRSWEEQEKGVAIVNRMKRKHHTNMILVDIVPFLNPNLLSSSPSLGSHELLQVADGVVVVALHSHLLPQPIIQHHLDHLLLSSLSQEKQNPRSSQSSTEQNAKLKRKFLRSCGSNPGNYYAIDGNRIGDKSVVLFIKPVDVEFISKLNEELNTKKTTISGKVFQNINVSQCYHQSRQFSNQYRRDCFAPFNLLPFDGGKVAWTGISSMQLRTFSTPQINFIIRGPVHCNALPSDPYLSSDLVAAVPSTISSLDNIDFQKLQNGSDIRGVAVAGVEGEPVNLTELVAEAIGAGFAAWLLEKKKADGSRRLRVSIGHDSRISAKKLQDAISQGIAGAGLDVIQYGLASTPAMFNSTLTEDEALFCPADGSIMITASHLPFNRNGFKFFTNAGGLGKADIKEILGRAAEFYRNLNNTDGLINSRGKGSATIEQVDYMSVYASDLVKAVRKAAGNKDKPLEGFHIVVDAGNGAGGFFAAKVLEPLGAITSGSQFLEPDGLFPNHIPNPEDKTAMKAITEAVLHNKADLGIIFDTDVDRSAAVDSTGREFNRNRLIALMSAIVLEEHPGTTIVTDSVTSDGLTLFIEKKLGGKHHRFKRGYKNVIDEAIRLNSIGEESHLAIETSGHGALKENHWLDDGAYLMDESQVKILNKLASARASGLGGGSQVLTDLVEGLQEPAVAVELRLKINQNHPDLQGRPFRDYGEAVLKHVENLVASDSKLLKAPVRVSGFGGWFLLRLSLHDPVLPLNIEAPSNDDSIKLGLAVLAAAKEFPALDTSALDKFVQV | 1451 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 15567962 | 15588629 | + | Lsi08G007200.1 | Lsi08g00720 | 668646 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi08g00720 | 1451 | CDD | PMM_PGM | 929 | 1422 | - | - | |
Lsi08g00720 | 1451 | SMART | B3_2 | 122 | 224 | IPR003340 | GO:0003677 | |
Lsi08g00720 | 1451 | PANTHER | AUXIN RESPONSE FACTOR 16 | 12 | 683 | - | - | |
Lsi08g00720 | 1451 | SUPERFAMILY | DNA-binding pseudobarrel domain | 109 | 224 | IPR015300 | - | |
Lsi08g00720 | 1451 | MobiDBLite | consensus disorder prediction | 549 | 600 | - | - | |
Lsi08g00720 | 1451 | Pfam | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I | 929 | 1073 | IPR005844 | GO:0005975|GO:0016868 | |
Lsi08g00720 | 1451 | Pfam | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III | 1216 | 1306 | IPR005846 | GO:0005975|GO:0016868 | |
Lsi08g00720 | 1451 | Pfam | B3 DNA binding domain | 122 | 223 | IPR003340 | GO:0003677 | |
Lsi08g00720 | 1451 | Gene3D | - | 1208 | 1326 | - | - | |
Lsi08g00720 | 1451 | Pfam | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II | 1106 | 1211 | IPR005845 | GO:0005975 | |
Lsi08g00720 | 1451 | Gene3D | - | 1129 | 1205 | - | - | |
Lsi08g00720 | 1451 | SUPERFAMILY | Phosphoglucomutase, first 3 domains | 1109 | 1212 | IPR016055 | GO:0005975|GO:0016868 | |
Lsi08g00720 | 1451 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 12 | 683 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Lsi08g00720 | 1451 | CDD | B3_DNA | 121 | 222 | IPR003340 | GO:0003677 | |
Lsi08g00720 | 1451 | ProSiteProfiles | B3 DNA-binding domain profile. | 122 | 224 | IPR003340 | GO:0003677 | |
Lsi08g00720 | 1451 | SUPERFAMILY | Phosphoglucomutase, first 3 domains | 934 | 1134 | IPR016055 | GO:0005975|GO:0016868 | |
Lsi08g00720 | 1451 | SUPERFAMILY | Phosphoglucomutase, first 3 domains | 1216 | 1306 | IPR016055 | GO:0005975|GO:0016868 | |
Lsi08g00720 | 1451 | Gene3D | - | 320 | 391 | - | - | |
Lsi08g00720 | 1451 | Gene3D | - | 927 | 1085 | - | - | |
Lsi08g00720 | 1451 | PRINTS | Phosphoglucomutase/phosphomannomutase family signature | 1191 | 1206 | IPR005841 | GO:0005975|GO:0016868 | |
Lsi08g00720 | 1451 | PRINTS | Phosphoglucomutase/phosphomannomutase family signature | 1127 | 1146 | IPR005841 | GO:0005975|GO:0016868 | |
Lsi08g00720 | 1451 | PRINTS | Phosphoglucomutase/phosphomannomutase family signature | 1162 | 1175 | IPR005841 | GO:0005975|GO:0016868 | |
Lsi08g00720 | 1451 | PRINTS | Phosphoglucomutase/phosphomannomutase family signature | 1036 | 1050 | IPR005841 | GO:0005975|GO:0016868 | |
Lsi08g00720 | 1451 | Pfam | Auxin response factor | 281 | 364 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Lsi08g00720 | 1451 | Gene3D | - | 605 | 691 | - | - | |
Lsi08g00720 | 1451 | Gene3D | - | 120 | 224 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi08g00720 | Lsi-Chr8:15567962 | Lsi10g01262 | Lsi-Chr10:16880026 | 0 | dispersed | |
Lsi04g01125 | Lsi-Chr4:14784135 | Lsi08g00720 | Lsi-Chr8:15567962 | 1.88E-122 | transposed | |
Lsi01g01337 | Lsi-Chr1:11579871 | Lsi08g00720 | Lsi-Chr8:15567962 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25756 | PF02878 | PGM_PMM_I | 8.70E-27 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi08g00720 | - | - | cmo:103496426 | 1225.69 |