Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00720 ATGAATAGAGGAATGGATTCAGTGATTGATCCAATGATGAACCATGACAAGCATTTAGATTCTCAGCTATGGCATGCCTGTGCTGGTGGGCTGATTCAATTGCCCACCATTAACTCAAAGGTGGTCTACTTCCCCCAGGGCCACGCTGAGCATGCCCAGGGGAATGTCGATTTCGGGAATGCTCGAATTCCTTCACTCATTCCTTGCAGGGTATCTTCCATAAGACATATGGCAGATCCTGAAACTGATGAGGTTTTTGCTAAGATAAAGTTGGCTCCAATGGGGAACAATGAATTCAGTTTGGATAATGATGATGAGCTTCTAGGCCACAATGAAATTAGGAGTCAGGAGAAACCTACCTCCTTTGCTAAGACATTGACCCAATCTGATGCAAACAATGGTGGAGGATTCTCTGTGCCTCGTTATTGCGCTGAGACGATCTTTCCTCGGTTGGATTACTCGGTAGAGCCTCCTGTTCAGACCATTCTTGCCAAGGATGTTCATGGTGAGATTTGGAAGTTTAGGCATATATATAGAGGAACTCCACGTCGCCATCTTTTGACGACTGGGTGGAGTAATTTTGTGAATCAGAAGAAACTTGTTGCTGGGGACTCAATTGTTTTCTTGAGGGCAGAAACTGGCGATCTTTGTATTGGAGTTAGACGAGCCAAGAGGGGAATTGGTTGTGGAATTGATTACTCACCTGGCTGGAACCCAACTAATTCAGGCCCTCCACTTGTGGGGTTTTCTGATTTTATGAGGGAGAATGAAGGTAGATTGGTGAGAAGAAACTCAAATGGGAATCTGAGCGGGAGAGTGAAGGTAGAATCCGTCATTGAAGCTGCAATGCTTGCTGCCAGTGGCAAGCCGTTTGAGATTGTGTACTACCCATGTGCTGGTACTCCAGAGTTTGTTGTTAAGGCCTCTGATTTAAGATCTGCAATGCAAATTCACTGGTATTCTGCTATGAGATTCAAGATGCCTTTTGAAACCGAGGATTCATCTCGGATAAGCTGGTTTATGGGAACTATATCTGCTATCCAGGTAGCTGATCCTATTCGGTGGCCTGATTCTCCATGGCGAATGTTGCAGGTGACATGGGATGAGCCAGATTTACTGCAAAATGTGAAGAGTGTCAACCCATGGTTGGTTGAAGTGGTAGTAAATATGCCAGCTATCCATGTCTCCCCCTTCTCGCCACCGAGAAAGAAGCCACGTTTTCCACTTCCAGCAGAAACTTCTGTATTTGGTCACCTTCCAATGCCGTCGTTTTCCACCAATATCTTTGATACAACCAACCCCTTACAAAGTATTACAGCTAACAAAATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCACCCAACCTCCAAATCAGCAAACCGCATTTGGGACAATTTTCCCCTGGTTTAAAGCACCTTGATGACGCCACTCCTCTTCCTGGCATCCGAAGCGAAGATATTTTTGGAGGCATGAAAAACCCTGATAATCGTTCTCACTGGCTAACAATGGGAAATCATATCCAAAGCTCAAAAGAAAGCTCAAAGGAAAGCTCGAAAGAAAGCAAAGAAACGAAACCAACTCATATCATATTGTTTGGCCAACTCATTTTTCCTAACCAACAGGTTTCTAACAGTTGCTCTGGAGATACGACGAATGCATCAGATGCAAATCAAGAGAAAGCATCAAATCTTTCTGACGGTTCTGGTTTGTCATCCCAACAAAATGGTTCGCTGGAGAATTCATCAGAGGGAGGATCTACCTCGTACAACGGTCAGGACAAAACCGGTCTTAGCTTGGACACTGGTCATTGCAAAGTGTTTATGGAGTTGGAGAATGTTGGTCGTACTCTTGATCTAACAGCTCTCAGGTCGTACGAAGAATTGTATAGAAAATTGGGCAATATTCTTGGTTTAAGAAGCTCAGAGATGCTGAATTCTGTTCTTTATCAGGATGCACTTGGCGCTACAAAGCATGTTGGAGAAGAGCCTTTCAGGAGTTGGGAAGAGCAGGAGAAAGGAGTGGCCATAGTGAACAGGATGAAAAGAAAACATCATACTAATATGATCCTTGTAGATATTGTACCATTTCTGAATCCGAATCTTCTCAGCTCTAGTCCCAGTCTGGGCAGCCACGAGCTTCTTCAAGTCGCCGATGGTGTCGTCGTCGTTGCACTTCACTCTCACCTTCTTCCCCAACCGATCATTCAGCACCACCTCGATCATCTTCTTCTTTCTTCTCTCTCCCAAGAAAAGCAAAACCCTAGGTCGTCTCAGAGTTCAACGGAGCAAAATGCAAAATTAAAGAGAAAATTTTTGCGCTCATGCGGTTCCAATCCTGGGAACTACTATGCAATTGATGGTAATCGAATCGGGGATAAATCTGTTGTTCTATTTATCAAACCAGTCGATGTTGAGTTCATTTCCAAATTAAACGAAGAGTTGAATACAAAAAAGACTACAATTTCAGGGAAGGTTTTCCAAAATATTAATGTATCACAGTGCTACCACCAGTCTAGGCAGTTCAGCAACCAATATCGAAGGGACTGTTTTGCCCCTTTTAACTTGCTTCCCTTTGATGGAGGGAAGGTTGCATGGACTGGCATCTCATCCATGCAGTTGCGCACCTTTTCCACACCCCAGATAAATTTTATTATTCGAGGACCTGTTCACTGCAATGCATTGCCATCTGATCCATACTTGTCTTCTGATCTTGTTGCAGCTGTTCCATCTACAATCTCTTCTCTCGATAATATTGATTTCCAGAAGCTTCAAAATGGAAGTGATATTCGAGGTGTTGCTGTTGCTGGTGTTGAGGGAGAGCCCGTGAATCTTACTGAACTAGTTGCAGAAGCAATAGGAGCTGGCTTTGCTGCATGGTTGTTAGAAAAGAAAAAAGCTGATGGTTCGCGACGGTTGAGAGTTTCTATTGGACATGATTCACGAATATCAGCTAAAAAGTTACAGGATGCAATTTCTCAAGGTATAGCTGGTGCAGGGCTGGATGTTATTCAATATGGATTAGCTTCTACACCAGCTATGTTTAACAGCACTCTTACGGAAGATGAAGCACTTTTTTGTCCTGCTGATGGATCTATTATGATAACTGCAAGTCATTTGCCGTTCAACAGGAATGGATTCAAATTTTTTACTAATGCTGGTGGGCTTGGCAAAGCTGACATTAAAGAAATTCTGGGGCGTGCTGCAGAATTCTATAGAAATCTGAATAACACAGATGGTTTGATAAATTCAAGGGGGAAAGGTTCTGCAACAATAGAGCAGGTCGATTACATGAGCGTCTATGCATCTGATCTTGTGAAGGCAGTTCGTAAAGCTGCAGGAAATAAAGATAAGCCCTTGGAAGGATTCCATATTGTTGTTGATGCTGGAAACGGAGCAGGGGGGTTTTTTGCAGCAAAGGTGCTTGAACCACTTGGTGCAATCACTTCGGGTAGTCAGTTCTTGGAGCCGGATGGTTTATTTCCAAACCATATCCCAAATCCTGAGGACAAGACAGCAATGAAAGCCATAACAGAGGCTGTCCTTCACAACAAAGCTGATTTAGGGATCATCTTTGACACAGATGTTGACAGATCTGCTGCTGTGGATTCTACTGGACGTGAGTTTAACCGGAATCGCCTAATTGCCTTGATGTCTGCCATTGTTCTTGAGGAGCATCCTGGAACAACTATTGTTACAGACAGTGTGACTTCTGATGGCCTAACCTTGTTTATAGAGAAGAAACTTGGTGGAAAACATCACAGGTTCAAAAGAGGCTACAAAAATGTTATTGATGAAGCTATCCGTTTGAATTCTATTGGTGAGGAGTCACATTTGGCTATTGAAACCAGTGGTCATGGAGCTCTTAAGGAGAACCATTGGCTTGATGATGGCGCATATCTCATGGATGAATCTCAGGTAAAAATTTTGAACAAACTTGCATCAGCAAGAGCCTCAGGATTGGGTGGTGGAAGCCAAGTTTTGACTGATCTGGTGGAAGGTTTACAAGAGCCTGCCGTTGCTGTCGAGTTGCGATTAAAAATAAATCAAAACCATCCAGACCTTCAAGGAAGACCCTTCCGTGATTATGGTGAAGCAGTGCTGAAACATGTTGAGAATCTTGTTGCTTCTGATTCCAAGCTTCTGAAAGCTCCTGTCCGGGTTTCGGGATTTGGCGGGTGGTTTCTTCTGAGACTCTCATTGCATGATCCTGTACTTCCTCTTAACATAGAGGCGCCAAGCAATGACGACTCCATAAAACTCGGCCTTGCAGTCCTAGCTGCTGCCAAGGAATTCCCTGCTTTGGATACGTCTGCACTAGACAAATTCGTTCAAGTATGA 4356 43.78 MNRGMDSVIDPMMNHDKHLDSQLWHACAGGLIQLPTINSKVVYFPQGHAEHAQGNVDFGNARIPSLIPCRVSSIRHMADPETDEVFAKIKLAPMGNNEFSLDNDDELLGHNEIRSQEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSVEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAETGDLCIGVRRAKRGIGCGIDYSPGWNPTNSGPPLVGFSDFMRENEGRLVRRNSNGNLSGRVKVESVIEAAMLAASGKPFEIVYYPCAGTPEFVVKASDLRSAMQIHWYSAMRFKMPFETEDSSRISWFMGTISAIQVADPIRWPDSPWRMLQVTWDEPDLLQNVKSVNPWLVEVVVNMPAIHVSPFSPPRKKPRFPLPAETSVFGHLPMPSFSTNIFDTTNPLQSITANKIPAGIQGARHTQFGLSSPNLQISKPHLGQFSPGLKHLDDATPLPGIRSEDIFGGMKNPDNRSHWLTMGNHIQSSKESSKESSKESKETKPTHIILFGQLIFPNQQVSNSCSGDTTNASDANQEKASNLSDGSGLSSQQNGSLENSSEGGSTSYNGQDKTGLSLDTGHCKVFMELENVGRTLDLTALRSYEELYRKLGNILGLRSSEMLNSVLYQDALGATKHVGEEPFRSWEEQEKGVAIVNRMKRKHHTNMILVDIVPFLNPNLLSSSPSLGSHELLQVADGVVVVALHSHLLPQPIIQHHLDHLLLSSLSQEKQNPRSSQSSTEQNAKLKRKFLRSCGSNPGNYYAIDGNRIGDKSVVLFIKPVDVEFISKLNEELNTKKTTISGKVFQNINVSQCYHQSRQFSNQYRRDCFAPFNLLPFDGGKVAWTGISSMQLRTFSTPQINFIIRGPVHCNALPSDPYLSSDLVAAVPSTISSLDNIDFQKLQNGSDIRGVAVAGVEGEPVNLTELVAEAIGAGFAAWLLEKKKADGSRRLRVSIGHDSRISAKKLQDAISQGIAGAGLDVIQYGLASTPAMFNSTLTEDEALFCPADGSIMITASHLPFNRNGFKFFTNAGGLGKADIKEILGRAAEFYRNLNNTDGLINSRGKGSATIEQVDYMSVYASDLVKAVRKAAGNKDKPLEGFHIVVDAGNGAGGFFAAKVLEPLGAITSGSQFLEPDGLFPNHIPNPEDKTAMKAITEAVLHNKADLGIIFDTDVDRSAAVDSTGREFNRNRLIALMSAIVLEEHPGTTIVTDSVTSDGLTLFIEKKLGGKHHRFKRGYKNVIDEAIRLNSIGEESHLAIETSGHGALKENHWLDDGAYLMDESQVKILNKLASARASGLGGGSQVLTDLVEGLQEPAVAVELRLKINQNHPDLQGRPFRDYGEAVLKHVENLVASDSKLLKAPVRVSGFGGWFLLRLSLHDPVLPLNIEAPSNDDSIKLGLAVLAAAKEFPALDTSALDKFVQV 1451
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 15567962 15588629 + Lsi08G007200.1 Lsi08g00720 668646
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00720 1451 CDD PMM_PGM 929 1422 - -
Lsi08g00720 1451 SMART B3_2 122 224 IPR003340 GO:0003677
Lsi08g00720 1451 PANTHER AUXIN RESPONSE FACTOR 16 12 683 - -
Lsi08g00720 1451 SUPERFAMILY DNA-binding pseudobarrel domain 109 224 IPR015300 -
Lsi08g00720 1451 MobiDBLite consensus disorder prediction 549 600 - -
Lsi08g00720 1451 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 929 1073 IPR005844 GO:0005975|GO:0016868
Lsi08g00720 1451 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 1216 1306 IPR005846 GO:0005975|GO:0016868
Lsi08g00720 1451 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
Lsi08g00720 1451 Gene3D - 1208 1326 - -
Lsi08g00720 1451 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 1106 1211 IPR005845 GO:0005975
Lsi08g00720 1451 Gene3D - 1129 1205 - -
Lsi08g00720 1451 SUPERFAMILY Phosphoglucomutase, first 3 domains 1109 1212 IPR016055 GO:0005975|GO:0016868
Lsi08g00720 1451 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 683 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lsi08g00720 1451 CDD B3_DNA 121 222 IPR003340 GO:0003677
Lsi08g00720 1451 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Lsi08g00720 1451 SUPERFAMILY Phosphoglucomutase, first 3 domains 934 1134 IPR016055 GO:0005975|GO:0016868
Lsi08g00720 1451 SUPERFAMILY Phosphoglucomutase, first 3 domains 1216 1306 IPR016055 GO:0005975|GO:0016868
Lsi08g00720 1451 Gene3D - 320 391 - -
Lsi08g00720 1451 Gene3D - 927 1085 - -
Lsi08g00720 1451 PRINTS Phosphoglucomutase/phosphomannomutase family signature 1191 1206 IPR005841 GO:0005975|GO:0016868
Lsi08g00720 1451 PRINTS Phosphoglucomutase/phosphomannomutase family signature 1127 1146 IPR005841 GO:0005975|GO:0016868
Lsi08g00720 1451 PRINTS Phosphoglucomutase/phosphomannomutase family signature 1162 1175 IPR005841 GO:0005975|GO:0016868
Lsi08g00720 1451 PRINTS Phosphoglucomutase/phosphomannomutase family signature 1036 1050 IPR005841 GO:0005975|GO:0016868
Lsi08g00720 1451 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lsi08g00720 1451 Gene3D - 605 691 - -
Lsi08g00720 1451 Gene3D - 120 224 IPR015300 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00720 Lsi-Chr8:15567962 Lsi10g01262 Lsi-Chr10:16880026 0 dispersed
Lsi04g01125 Lsi-Chr4:14784135 Lsi08g00720 Lsi-Chr8:15567962 1.88E-122 transposed
Lsi01g01337 Lsi-Chr1:11579871 Lsi08g00720 Lsi-Chr8:15567962 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25756 PF02878 PGM_PMM_I 8.70E-27 No_clan Lsi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00720 - - cmo:103496426 1225.69