Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00726 ATGGCGAAGGACTACCACGATCCGCCACCGGTTCCGCTCATCGACGGCGAGGAGATTAGGAAGTGGTCGTTCTACAGAGCTTTGATTGCGGAGTTCGTAGCGACTCTGCTTTTCCTGTATGTGACTGTGTTGACGGTGATCGGGTACAAATCGCAAACGGATGGAATCGGGAAGAAGAATGTGGATTCTTGTGGAGGAGTTGGGATTCTGGGAATTGCTTGGGCATTTGGAGGAATGATCTTCGTTCTTGTTTACTGTACTGCTGGAATTTCAGGGGGCCACATAAACCCAGCGGTGACATTTGGGCTGCTGTTGGGCCGAAAGGTGTCACTGGTGCGGGCCGTAATGTACATAGTGGCCCAATGTTTGGGGGCCATCAGCGGGGTTGGGCTTGTTAAGGCCTTCCAGAAGGCCCACTTCCATAAGTACGGCGGTGGGGCCAATGGGCTTGCCGATGACCATACCGTCGGCGTTGGACTGGCCGCCGAGATCGTCGGCACTTTTGTGTTGGTCTACACTGTCTTCTCCGCCACCGATCCTAAACGAAATGCCAGAGATTCCCATGTTCCCGTTTTGGCTCCACTTCCAATTGGGTTTGCAGTTTTCATGGTTCATTTGGCTACAATTCCAATCACTGGCACTGGAATCAACCCAGCAAGAAGCTTGGGATCTGCCGTTATTTTAAATGAACAAAAGGCTTGGAATAACCATTGGATATTTTGGGTTGGACCCTTCATAGGAGCAGCCATTGCAGCATTTTACCACCAATTCATCTTGAGAGCAGGTGCTGTTAAAGCTCTTGGTTCATTTAGAAGCAACCCACATGTGTGA 831 50.54 MAKDYHDPPPVPLIDGEEIRKWSFYRALIAEFVATLLFLYVTVLTVIGYKSQTDGIGKKNVDSCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLGRKVSLVRAVMYIVAQCLGAISGVGLVKAFQKAHFHKYGGGANGLADDHTVGVGLAAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGSAVILNEQKAWNNHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPHV 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15605389 15609366 + Lsi08G007260.1 Lsi08g00726 668652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00726 276 Gene3D Glycerol uptake facilitator protein. 11 276 IPR023271 -
Lsi08g00726 276 SUPERFAMILY Aquaporin-like 18 260 IPR023271 -
Lsi08g00726 276 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Lsi08g00726 276 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 273 IPR034294 -
Lsi08g00726 276 TIGRFAM MIP: MIP family channel proteins 30 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi08g00726 276 Pfam Major intrinsic protein 18 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi08g00726 276 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi08g00726 276 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi08g00726 276 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi08g00726 276 PRINTS Major intrinsic protein family signature 238 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi08g00726 276 PRINTS Major intrinsic protein family signature 198 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi08g00726 276 PRINTS Major intrinsic protein family signature 26 45 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi08g00726 276 PANTHER AQUAPORIN PIP2-4-RELATED 2 273 - -
Lsi08g00726 276 CDD MIP 26 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00726 Lsi-Chr8:15605389 Lsi10g01268 Lsi-Chr10:16972498 7.70E-158 dispersed
Lsi01g01346 Lsi-Chr1:11656610 Lsi08g00726 Lsi-Chr8:15605389 4.12E-138 wgd
Lsi03g02029 Lsi-Chr3:31669324 Lsi08g00726 Lsi-Chr8:15605389 3.51E-114 wgd
Lsi04g00068 Lsi-Chr4:840507 Lsi08g00726 Lsi-Chr8:15605389 3.59E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00726 K09872 - csv:101205700 511.916