Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00736 ATGCTACGTCTTCAATGGCTTTCTTCTTCCTTGCTTCCGTCATTCAACCCCGAACTCTCGCCGGAAACTGTTTCGAACCGCCAACTGTGTAGCCTCAACTCCTTTCGCCCACTCCTCACTCTCACTACTACACGCAAACCTTCTCCCAAATGCCAATACTCCTGGAACACGCAGCAGCAGTCGGCCTTCGAACCGGGCTCTCAGACCGATTCATTTTCCTCACAAACTCGCGCCGGAGTTGCTGCTGCTGCATTGCCACCAAGGTTTTTTGTTGGTCATTCGATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTTACACCTCTAGATGTATGGGCGTTCAAAATATCCAGGGAAGGATTTGTATTGCTTCAATTTGCTCCTGCAGCTGGTGTTCGGCAATATGATTGGAGCAGAAAACAGGTTAATGCTGACTACTATTCCACAGGTTCTATATTTGGCATCTTAGAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTTGGCCCACGCGAGTCTTGTGAATTCTTTCATGACCCCTATAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATTCTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGCCATTTCTTCAATCTTAGCGTTCAGAACAAGCTAATCAACGTGGATGAGAGCATTTATATTCCCATCACCAAAGGAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTTATGGGTTGGCATACGATTGCAAACACCATCACGAAGCCTGAAGATAGCAGCCGAGTAAATAATGCCAATCCCAGATATGGGGGTGACTTTGAATGGAACAGATAG 867 46.48 MLRLQWLSSSLLPSFNPELSPETVSNRQLCSLNSFRPLLTLTTTRKPSPKCQYSWNTQQQSAFEPGSQTDSFSSQTRAGVAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDVWAFKISREGFVLLQFAPAAGVRQYDWSRKQVNADYYSTGSIFGILEVFSLSVTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKGEYTVLVEAFKFILPHLMGWHTIANTITKPEDSSRVNNANPRYGGDFEWNR 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15698952 15703285 - Lsi08G007360.1 Lsi08g00736 668662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00736 288 Pfam Whirly transcription factor 95 147 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lsi08g00736 288 Pfam Whirly transcription factor 162 245 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lsi08g00736 288 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 44 288 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lsi08g00736 288 Gene3D Transcriptional Coactivator Pc4; Chain A 80 269 IPR009044 GO:0003677|GO:0006355
Lsi08g00736 288 SUPERFAMILY ssDNA-binding transcriptional regulator domain 87 288 IPR009044 GO:0003677|GO:0006355
Lsi08g00736 288 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 44 288 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00736 - - - csv:101203474 474.937
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00178 Lsi-Chr8:3653988 Lsi08g00736 Lsi-Chr8:15698952 3.22E-43 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g00736 . 46 288 Whirly Transcription Factor Family AT1G14410 65.7 1.4e-87 319.7
Lsi08g00178 . 114 273 Whirly Transcription Factor Family AT1G71260 67.5 1.5e-59 226.5
Lsi08g00736 . 46 288 Whirly Transcription Factor Family AT2G02740 64.8 9.3e-87 317.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25759 PF08536 Whirly 2.00E-32 CL0609 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00736 Lsi_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0