Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00736 ATGCTACGTCTTCAATGGCTTTCTTCTTCCTTGCTTCCGTCATTCAACCCCGAACTCTCGCCGGAAACTGTTTCGAACCGCCAACTGTGTAGCCTCAACTCCTTTCGCCCACTCCTCACTCTCACTACTACACGCAAACCTTCTCCCAAATGCCAATACTCCTGGAACACGCAGCAGCAGTCGGCCTTCGAACCGGGCTCTCAGACCGATTCATTTTCCTCACAAACTCGCGCCGGAGTTGCTGCTGCTGCATTGCCACCAAGGTTTTTTGTTGGTCATTCGATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTTACACCTCTAGATGTATGGGCGTTCAAAATATCCAGGGAAGGATTTGTATTGCTTCAATTTGCTCCTGCAGCTGGTGTTCGGCAATATGATTGGAGCAGAAAACAGGTTAATGCTGACTACTATTCCACAGGTTCTATATTTGGCATCTTAGAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTTGGCCCACGCGAGTCTTGTGAATTCTTTCATGACCCCTATAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATTCTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGCCATTTCTTCAATCTTAGCGTTCAGAACAAGCTAATCAACGTGGATGAGAGCATTTATATTCCCATCACCAAAGGAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTTATGGGTTGGCATACGATTGCAAACACCATCACGAAGCCTGAAGATAGCAGCCGAGTAAATAATGCCAATCCCAGATATGGGGGTGACTTTGAATGGAACAGATAG 867 46.48 MLRLQWLSSSLLPSFNPELSPETVSNRQLCSLNSFRPLLTLTTTRKPSPKCQYSWNTQQQSAFEPGSQTDSFSSQTRAGVAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDVWAFKISREGFVLLQFAPAAGVRQYDWSRKQVNADYYSTGSIFGILEVFSLSVTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKGEYTVLVEAFKFILPHLMGWHTIANTITKPEDSSRVNNANPRYGGDFEWNR 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15698952 15703285 - Lsi08G007360.1 Lsi08g00736 668662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00736 288 Pfam Whirly transcription factor 95 147 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lsi08g00736 288 Pfam Whirly transcription factor 162 245 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lsi08g00736 288 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 44 288 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lsi08g00736 288 Gene3D Transcriptional Coactivator Pc4; Chain A 80 269 IPR009044 GO:0003677|GO:0006355
Lsi08g00736 288 SUPERFAMILY ssDNA-binding transcriptional regulator domain 87 288 IPR009044 GO:0003677|GO:0006355
Lsi08g00736 288 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 44 288 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00178 Lsi-Chr8:3653988 Lsi08g00736 Lsi-Chr8:15698952 3.22E-43 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25759 PF08536 Whirly 2.00E-32 CL0609 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00736 - - csv:101203474 474.937