Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00746 ATGGTCGGATTTAGAACCTTGTTTGTGTGTTCTCTGTTGTTTTTTGTGGTAGCAAATGCCAATGTGGATGAGGATGAATACTGGCAGACTCGTGCCGTCGAATCTAAGAAAATAGCTCAAGATGCCTACAATCCTAACCCTGAAATTGTTACCGATAACTTGAACGCCGCCGTCGGTCGGGCGATGATGGGTCATAATAGTACGAGAAGGAGTTTGAAGAAATACAGAGGACCGTGCCTGAAGACGAACCCCATTGACAGATGTTGGAGATGCGATCCAAATTGGGCCAAGAACCGAAAGAAGCTAGCGGAATGTCCGTTGGGGTTCGGCCACAAAACTATCGGTGGAAAGAGAGGACCAATCTACGTGGTGACTGACGCGTCTGATGACGACTTGATTAATCCTAAACCCGGAACGCTGCGCTATGGCGTGATCCAAAAAGGTCCACTTTGGATTATCTTTGGGCGAAGCATGATCATTAGGTTGAGTCAAGAGCTAATGATCTCAAGTGACAAGACCATCGACGCTCGTGGCGCCAATGTCCACATTGCCTACGGCGCTGGCCTCACCGTTCAATTCGTCAACAATGTCATCATCCATAACCTTCACATTCACGACATTATTTCTAAATCAGGTGGAATGATTAGAGATGCTGTGGATCATTTTGGGTTCAGAACACAAAGTGATGGCGATGGCATCTCCATTTTTGGCTCAAGTCATATTTGGATCGACCATGTTTCCATGTCCAATTGTCAAGATGGTCTTATCGATGCAATCATGGGTTCAACTGCAATCACCATTTCCAATTCTCATTTCACTCACCACAATGAGGTGATGTTATTCGGAGCGAGCGATAGCTACGCAGAAGACTCGGTTATGCAAATAACGCTAGCATTCAATCATTTTGGGAGGGGATTGGTTCAAAGGATGCCAAGGTGTAGATGGGGTTTCTTCCATGTTGTTAACAATGACTACACCCATTGGCTTATGTATGCAATTGGTGGTAGCCAACATCCTACCATTGTTAGCCAAGGCAATCGTTTCATTGCTCCTCCAAACCCCAATGCCAAACAGGTAACAAAGAGAGACTATGCTATGGAGAGTGAATGGAAGAAGTGGTCATGGAGATCTGAAGGAGATGAGCTGATAAATGGAGCAGTGTTTGTTGCATCAGGGGATCAAACCAAAGGGAAGAGGAAGGGCTTATCAAGATATGATATGATTTCCTTCAAGCCAGGAACTTACGTCAGGAGACTTACACGCTTCGCTGGCACACTTGAATGTGCCCCAGGCAAACCATGCTAG 1305 45.75 MVGFRTLFVCSLLFFVVANANVDEDEYWQTRAVESKKIAQDAYNPNPEIVTDNLNAAVGRAMMGHNSTRRSLKKYRGPCLKTNPIDRCWRCDPNWAKNRKKLAECPLGFGHKTIGGKRGPIYVVTDASDDDLINPKPGTLRYGVIQKGPLWIIFGRSMIIRLSQELMISSDKTIDARGANVHIAYGAGLTVQFVNNVIIHNLHIHDIISKSGGMIRDAVDHFGFRTQSDGDGISIFGSSHIWIDHVSMSNCQDGLIDAIMGSTAITISNSHFTHHNEVMLFGASDSYAEDSVMQITLAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPNAKQVTKRDYAMESEWKKWSWRSEGDELINGAVFVASGDQTKGKRKGLSRYDMISFKPGTYVRRLTRFAGTLECAPGKPC 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15800810 15802590 - Lsi08G007460.1 Lsi08g00746 668672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00746 434 SUPERFAMILY Pectin lyase-like 83 425 IPR011050 -
Lsi08g00746 434 SMART amb_all 157 354 IPR002022 -
Lsi08g00746 434 Pfam Pectate lyase, N terminus 25 72 IPR007524 GO:0030570
Lsi08g00746 434 PANTHER PECTATE LYASE 18-RELATED 8 434 IPR045032 GO:0030570
Lsi08g00746 434 PANTHER PECTATE LYASE 8 434 - -
Lsi08g00746 434 PRINTS Pollen allergen Amb family signature 373 397 IPR018082 -
Lsi08g00746 434 PRINTS Pollen allergen Amb family signature 405 428 IPR018082 -
Lsi08g00746 434 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Lsi08g00746 434 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Lsi08g00746 434 PRINTS Pollen allergen Amb family signature 165 181 IPR018082 -
Lsi08g00746 434 PRINTS Pollen allergen Amb family signature 229 250 IPR018082 -
Lsi08g00746 434 PRINTS Pollen allergen Amb family signature 105 122 IPR018082 -
Lsi08g00746 434 PRINTS Pollen allergen Amb family signature 129 154 IPR018082 -
Lsi08g00746 434 Pfam Pectate lyase 167 348 IPR002022 -
Lsi08g00746 434 Gene3D - 82 427 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00455 Lsi-Chr4:4319274 Lsi08g00746 Lsi-Chr8:15800810 0 dispersed
Lsi08g00746 Lsi-Chr8:15800810 Lsi09g01161 Lsi-Chr9:18677108 3.89E-170 dispersed
Lsi08g00746 Lsi-Chr8:15800810 Lsi03g01460 Lsi-Chr3:25486590 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00746 K01728 - csv:101217922 826.239