Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00758 ATGGTCAAAGACTTAGGTGAAAATGTGGTGGGAGTGTGCTTTGTAGCACAAGACATAACATGTCAAAAGATGGTAATGGACAAGTTCACAAAACTACAAGGTGATTACAAAGCCATTGTACAAAACCCTAATCCACTAATCCCTCCAATATTTGGATTAGATGAATTTGGTTGGTGTTCAGAATGGAATTTAGCAATGACAAAGCTAAGTGGATGGTCTCGTGAAGCAGTTCTCAACAAAATGCTTTTAGGAGAAGTTTTTGGTACACAATTAAACTCTTCATCATGTTGTTGCCAACTCAAGAATCAAGAAGCTTTTGTGAATCTTGGGATTGTGTTGAACAATGCAATGAGTGGTCAAGATCCTGAAAAGAATATCTCATTTGGTTTCTATGCAAGAAATGGGATGTTTGTAGAATGTCTTCTATGTGTTAATAAGATATTGGATAGAGATGGTGGAATTATTGGAGTTTTTTGCTTCTTGCAACTTGCTAGTCAAGAGCTTCAACAAGCATTGAGTATTCAAAAATTATGTGAGAGAACAGCTTTGAATAGGTTGAAGGCATTGGGATATATGAAGAGGCAGATTCAAAATCCTCTTTGTGGGATCATTTTTTCAAGGAAAATGTTGCAGCAAACTCAGTTGGGAGTGGAACAGAAGCAACTTTTGCATAATAGTGTCAATTGTCAAAGGCAAATCTCCAAGGTTCTTGATGAATCTCATGATCTTGATCAGATTATCCAAGGTTTCATTGATTTAGAAATGGTTGAGTTTTCATTGTATGAAGTATTGGTGGTATCAATTAGTCAAGTTATGATGAAGAGCAAAGGGAAAGGTATTCAAATAGCAAATGAGATTGCAGAAGAGATCATGTCTGAGACCTTATATGGAGATAATTTGAGACTTCAACAAGTCATGGCTGATTTCTTGTTGATATCAGTTAATTATGCACCAACTGGAGGCCAACTCATGGTTTCAACAAATTTGACTAAGGATAAATTAGGAAACTCAGTGCATCTTGTGCATCTTGAATTCAGAAAACTTGTGAAGATGATGAATGGAGATGTGAGATATGTAAGGGAAGCAGGCAACTCAAGCTTCATTATAACTCTTGAGCTTGCTGCTGCTCATAACCTAAGAACCTAA 1146 36.47 MVKDLGENVVGVCFVAQDITCQKMVMDKFTKLQGDYKAIVQNPNPLIPPIFGLDEFGWCSEWNLAMTKLSGWSREAVLNKMLLGEVFGTQLNSSSCCCQLKNQEAFVNLGIVLNNAMSGQDPEKNISFGFYARNGMFVECLLCVNKILDRDGGIIGVFCFLQLASQELQQALSIQKLCERTALNRLKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLHNSVNCQRQISKVLDESHDLDQIIQGFIDLEMVEFSLYEVLVVSISQVMMKSKGKGIQIANEIAEEIMSETLYGDNLRLQQVMADFLLISVNYAPTGGQLMVSTNLTKDKLGNSVHLVHLEFRKLVKMMNGDVRYVREAGNSSFIITLELAAAHNLRT 381
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 15922089 15925733 + Lsi08G007580.1 Lsi08g00758 668684
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00758 381 PANTHER TWO-COMPONENT HISTIDINE KINASE 3 345 - -
Lsi08g00758 381 ProSiteProfiles PAS repeat profile. 35 87 IPR000014 -
Lsi08g00758 381 SUPERFAMILY PYP-like sensor domain (PAS domain) 49 160 IPR035965 -
Lsi08g00758 381 CDD PAS 46 162 IPR000014 -
Lsi08g00758 381 Pfam PAS fold 35 162 IPR013767 GO:0006355
Lsi08g00758 381 ProSiteProfiles Histidine kinase domain profile. 191 334 IPR005467 -
Lsi08g00758 381 PANTHER PHYTOCHROME A 3 345 - -
Lsi08g00758 381 Gene3D PAS domain 48 169 - -
Lsi08g00758 381 Gene3D - 228 346 IPR036890 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00758 Lsi-Chr8:15922089 Lsi11g01345 Lsi-Chr11:22083090 2.14E-83 dispersed
Lsi08g00755 Lsi-Chr8:15879561 Lsi08g00758 Lsi-Chr8:15922089 0 proximal
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00758 K12120 - csv:101219585 652.514