Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00758 ATGGTCAAAGACTTAGGTGAAAATGTGGTGGGAGTGTGCTTTGTAGCACAAGACATAACATGTCAAAAGATGGTAATGGACAAGTTCACAAAACTACAAGGTGATTACAAAGCCATTGTACAAAACCCTAATCCACTAATCCCTCCAATATTTGGATTAGATGAATTTGGTTGGTGTTCAGAATGGAATTTAGCAATGACAAAGCTAAGTGGATGGTCTCGTGAAGCAGTTCTCAACAAAATGCTTTTAGGAGAAGTTTTTGGTACACAATTAAACTCTTCATCATGTTGTTGCCAACTCAAGAATCAAGAAGCTTTTGTGAATCTTGGGATTGTGTTGAACAATGCAATGAGTGGTCAAGATCCTGAAAAGAATATCTCATTTGGTTTCTATGCAAGAAATGGGATGTTTGTAGAATGTCTTCTATGTGTTAATAAGATATTGGATAGAGATGGTGGAATTATTGGAGTTTTTTGCTTCTTGCAACTTGCTAGTCAAGAGCTTCAACAAGCATTGAGTATTCAAAAATTATGTGAGAGAACAGCTTTGAATAGGTTGAAGGCATTGGGATATATGAAGAGGCAGATTCAAAATCCTCTTTGTGGGATCATTTTTTCAAGGAAAATGTTGCAGCAAACTCAGTTGGGAGTGGAACAGAAGCAACTTTTGCATAATAGTGTCAATTGTCAAAGGCAAATCTCCAAGGTTCTTGATGAATCTCATGATCTTGATCAGATTATCCAAGGTTTCATTGATTTAGAAATGGTTGAGTTTTCATTGTATGAAGTATTGGTGGTATCAATTAGTCAAGTTATGATGAAGAGCAAAGGGAAAGGTATTCAAATAGCAAATGAGATTGCAGAAGAGATCATGTCTGAGACCTTATATGGAGATAATTTGAGACTTCAACAAGTCATGGCTGATTTCTTGTTGATATCAGTTAATTATGCACCAACTGGAGGCCAACTCATGGTTTCAACAAATTTGACTAAGGATAAATTAGGAAACTCAGTGCATCTTGTGCATCTTGAATTCAGAAAACTTGTGAAGATGATGAATGGAGATGTGAGATATGTAAGGGAAGCAGGCAACTCAAGCTTCATTATAACTCTTGAGCTTGCTGCTGCTCATAACCTAAGAACCTAA 1146 36.47 MVKDLGENVVGVCFVAQDITCQKMVMDKFTKLQGDYKAIVQNPNPLIPPIFGLDEFGWCSEWNLAMTKLSGWSREAVLNKMLLGEVFGTQLNSSSCCCQLKNQEAFVNLGIVLNNAMSGQDPEKNISFGFYARNGMFVECLLCVNKILDRDGGIIGVFCFLQLASQELQQALSIQKLCERTALNRLKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLHNSVNCQRQISKVLDESHDLDQIIQGFIDLEMVEFSLYEVLVVSISQVMMKSKGKGIQIANEIAEEIMSETLYGDNLRLQQVMADFLLISVNYAPTGGQLMVSTNLTKDKLGNSVHLVHLEFRKLVKMMNGDVRYVREAGNSSFIITLELAAAHNLRT 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15922089 15925733 + Lsi08G007580.1 Lsi08g00758 668684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00758 381 PANTHER TWO-COMPONENT HISTIDINE KINASE 3 345 - -
Lsi08g00758 381 ProSiteProfiles PAS repeat profile. 35 87 IPR000014 -
Lsi08g00758 381 SUPERFAMILY PYP-like sensor domain (PAS domain) 49 160 IPR035965 -
Lsi08g00758 381 CDD PAS 46 162 IPR000014 -
Lsi08g00758 381 Pfam PAS fold 35 162 IPR013767 GO:0006355
Lsi08g00758 381 ProSiteProfiles Histidine kinase domain profile. 191 334 IPR005467 -
Lsi08g00758 381 PANTHER PHYTOCHROME A 3 345 - -
Lsi08g00758 381 Gene3D PAS domain 48 169 - -
Lsi08g00758 381 Gene3D - 228 346 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00758 K12120 PHYA; phytochrome A - csv:101219585 652.514
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00758 Lsi-Chr8:15922089 Lsi11g01345 Lsi-Chr11:22083090 2.14E-83 dispersed
Lsi08g00755 Lsi-Chr8:15879561 Lsi08g00758 Lsi-Chr8:15922089 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi07g01094 . 30 1319 Histidine Kinase Gene Family AT2G17820 59.8 0.0e+00 1375.9
Lsi09g00708 CCT 175 1195 Histidine Kinase Gene Family AT2G01830 68.3 0.0e+00 1301.2
Lsi11g00010 . 18 923 Histidine Kinase Gene Family AT2G01830 65.2 0.0e+00 1187.9
Lsi09g01720 . 58 1018 Histidine Kinase Gene Family AT2G01830 53.0 6.3e-272 934.1
Lsi10g00055 . 304 1282 Histidine Kinase Gene Family AT2G01830 51.4 2.7e-267 918.7
Lsi04g01364 . 1 992 Histidine Kinase Gene Family AT5G10720 57.6 7.9e-295 1010.0
Lsi08g00755 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.9 0.0e+00 1830.5
Lsi11g01345 . 18 1112 Histidine Kinase Gene Family AT1G09570 55.1 0.0e+00 1214.1
Lsi05g01420 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.8 0.0e+00 1199.5
Lsi08g00758 . 3 377 Histidine Kinase Gene Family AT1G09570 62.6 1.3e-142 504.6
Lsi05g01420 . 13 1061 Histidine Kinase Gene Family AT2G18790 79.2 0.0e+00 1676.8
Lsi02g00857 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.4 0.0e+00 1238.0
Lsi08g00755 . 9 1054 Histidine Kinase Gene Family AT2G18790 52.9 0.0e+00 1087.8
Lsi11g01345 . 26 1069 Histidine Kinase Gene Family AT2G18790 52.5 0.0e+00 1079.3
Lsi11g01345 . 12 1116 Histidine Kinase Gene Family AT5G35840 61.5 0.0e+00 1363.6
Lsi05g01420 . 21 1122 Histidine Kinase Gene Family AT5G35840 53.0 0.0e+00 1153.7
Lsi08g00755 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1115.5
Lsi05g01420 . 3 1122 Histidine Kinase Gene Family AT4G16250 75.9 0.0e+00 1716.4
Lsi02g00857 . 32 1113 Histidine Kinase Gene Family AT4G16250 58.6 0.0e+00 1281.9
Lsi08g00755 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1132.9
Lsi11g01345 . 26 1115 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1121.3
Lsi02g00857 . 15 1129 Histidine Kinase Gene Family AT4G18130 62.6 0.0e+00 1372.5
Lsi05g01420 . 38 1120 Histidine Kinase Gene Family AT4G18130 59.0 0.0e+00 1271.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00758 Lsi_Chr08 FPKM 21.851952 22.666348 21.908459 22.632927 20.301132 18.419813 18.267263 27.55521 25.779789 27.053326