Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00767 ATGGCTTATCAGCATGGTCCGGGTCCTAGTTCGATATCTGGATCAAGTTCGAGTTCTGGTTTCTTGAACTCTCCCTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCTTGGGAGACTCAGAGCGAGACTATGAGGCGCTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTCGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGGGCTTGCGCAGACCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTGGCTTCACTTGGCCGACCTCGTCCACCTATATCTTATGGACGTTTGAGACAGCCTGCAGTATATGTTGGAGGCATGCAACCCAACAGGGGAGCTTATATTGGAAATTTTGGATATCAACAACCGGTTTCCTATGCTTATCAGCAGGGGCTTGCATATCCCCCTTATGGTTATGCTACCTATGGACCTGAGTATGTCTACCCACAGGGTGGATACAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGGGTGCCTGGGTCAGCAAGCCCTACTATTTATCATTATGGACAATTAGGTCAAACAGTCCCCGGTGGTCATGGGTATGGAGCAGTACATGGATATGCAATGCCAAATCCTCAGATCGTGCAGTTTAGTGGTCCTAATGTCAATACATTAACATCTTCTCCAATGCCTACTATTCAGGCGCCGTATCCTTCAGGTACTTTGCTTTGTATGCAGATTACTCTTGATTACAACATTGAGCAATTTGAGTTTTGGCTAGTCTCTTTAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCATTGTTCATTCTCCTTCTCAGTTTGTACAAGGTCATAGTCATGCTCACCAGAGACGTCAGATGGTCAAGTCGCTCCAGATGGTGGAGAAGGAATATGGAAGATGCAGGCTGCTCTTTCTCTAA 990 46.46 MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPNPQIVQFSGPNVNTLTSSPMPTIQAPYPSGTLLCMQITLDYNIEQFEFWLVSLGIPAPVAAQPQFIVHSPSQFVQGHSHAHQRRQMVKSLQMVEKEYGRCRLLFL 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16065831 16072326 + Lsi08G007670.1 Lsi08g00767 668693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00767 329 SMART rrm1_1 33 105 IPR000504 GO:0003723
Lsi08g00767 329 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Lsi08g00767 329 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Lsi08g00767 329 PANTHER RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 1 259 - -
Lsi08g00767 329 CDD RRM_RBM24_RBM38_like 32 107 - -
Lsi08g00767 329 Gene3D - 9 122 IPR012677 -
Lsi08g00767 329 PANTHER BOULE-RELATED 1 259 IPR037366 GO:0003729
Lsi08g00767 329 SUPERFAMILY RNA-binding domain, RBD 31 145 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00767 - - - csv:101211023 513.072
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00767 Lsi-Chr8:16065831 Lsi09g01822 Lsi-Chr9:27024412 1.56E-52 dispersed
Lsi08g00767 Lsi-Chr8:16065831 Lsi04g02239 Lsi-Chr4:29441839 4.85E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g453 . . . . . Bpe15g01075 Bma03g00325 . . . . . Car04g01335 . . . . . . . . . . . . . . . . . . . . Cone11ag1082 Cone18ag0495 Lsi08g00767 . . . . Blo04g00307 Bda14g00337 . . . . . . . . . . . . . . Bhi07g01028 . . . . . . . . . . . . . . . Chy03g01002 Cme03g01324
Vvi18g44 . . . . . . . . Cmo05g00978 Cmo12g00631 . . . Car12g00668 . . Cpe07g00603 . . . . . . . Cla08g00924 Cam08g1369 Cec08g0952 Cco08g1071 Clacu08g1077 . Cre08g0861 . . . . . . . Cme03g01324 Blo17g00909 Blo18g00730 . Bda01g01575 Bpe02g01768 . Bma01g00691 . . . . Cma12g00695 Cma05g00958 Car05g00841 . Cpe11g00771 . . . . . . . . . . . . . . . Lsi08g00767 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006014 1 0 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00767 Lsi_Chr08 FPKM 20.795031 28.086481 50.20042 52.208046 20.134418 19.096863 14.965203 64.212044 67.892006 66.518806