Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00770 ATGTCGGGATCTGAAACTGGTGTGATCACCAGTAGAGAACCCTTCAGCATCGGCGTTCAAAATAGCTCCTTACAGTCGCAATCGGCGGCCCAAAATATGAGATTAGCCTTCAGCGCCGATGGCCCAGCCGTCTACAAGCCTGTGACTGCATCAACCTCACCGTCCTACCAATCCTCCATGGCCGGAGTTTCTGGTAATGCCGGAATTGAGGGATCGGCTGGTGGAGGAGGGTCTATGTTGCCTCATGGTTTCAACATAAATTCGGTGGGCAGTGAGCAAATAAAGAGGAAGAGGGGCAGGCCAAGGAAATATGGACCAGATGGCTCCATGGCTTTAGCTTTGGGTTCTGGGCCGCCATCAGGAAGTGGAGGTTTTCCTCCTTCAAATATGGCTAATTCTGCTTCTGAAGGATTGGGCTCACCAAATTCATTGAAGAAAACTAAAGGAAGGCCACCTGGTTCTAAGAAAAAGCAACAATTGGAAGCTTTAGGATCGGCTGGTATTGGATTTACTCCACATGTTATTGATGTGAAAGCTGGAGAGGATGTATCGTCAAAAATAATGTCCTTTTCTCAGAATGGCCCCAGAGCTATATGTATCCTGTCTGCAAATGGAGCAATATCAAATGTGACTTTACGTCAACCTGCTACATCTGGTGGAACTGTTACTTATGAGGGGCCGTTTGAAATTTTGTCACTTTCGGGTTCATTTCTCCTGTCTGAAAATGCTGGTCAGAGAAGCAGAACTGGTGGGTTGAGTGTGTCTTTGTCCGGTCCAGATGGCCGAGTTTTAGGTGGTGGTGTGGCGGGTCTTCTCACGGCTTTATCTCCCGTTCAGGTGGTCGTGGGAAGTTTCCTAGCCGACAGCAACAAGGAACCGAAGTCAGTGCGCCAAAATGAACCCATCAGTGTCTCACCAATGCTAAACCCAGTCGGGTTTGGTCACATGACAGGAGGAGCCAGTAGTCCATCTCACGGGACGCTGAGCGAGTCTTCCGGTGGCGGCCCTGGCAGCCCCCTCAACAACAGCTCGGGAGCCTGCAACAACAGCAACCACCCACACGGCATGTCCGGCATGCCATGGAAGTAA 1089 50.32 MSGSETGVITSREPFSIGVQNSSLQSQSAAQNMRLAFSADGPAVYKPVTASTSPSYQSSMAGVSGNAGIEGSAGGGGSMLPHGFNINSVGSEQIKRKRGRPRKYGPDGSMALALGSGPPSGSGGFPPSNMANSASEGLGSPNSLKKTKGRPPGSKKKQQLEALGSAGIGFTPHVIDVKAGEDVSSKIMSFSQNGPRAICILSANGAISNVTLRQPATSGGTVTYEGPFEILSLSGSFLLSENAGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTALSPVQVVVGSFLADSNKEPKSVRQNEPISVSPMLNPVGFGHMTGGASSPSHGTLSESSGGGPGSPLNNSSGACNNSNHPHGMSGMPWK 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16089755 16093959 + Lsi08G007700.1 Lsi08g00770 668696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00770 362 MobiDBLite consensus disorder prediction 1 24 - -
Lsi08g00770 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 361 IPR039605 GO:0003680
Lsi08g00770 362 CDD DUF296 171 285 IPR005175 -
Lsi08g00770 362 MobiDBLite consensus disorder prediction 320 355 - -
Lsi08g00770 362 Pfam Plants and Prokaryotes Conserved (PCC) domain 172 285 IPR005175 -
Lsi08g00770 362 MobiDBLite consensus disorder prediction 309 362 - -
Lsi08g00770 362 Gene3D - 172 305 - -
Lsi08g00770 362 ProSiteProfiles PPC domain profile profile. 166 306 IPR005175 -
Lsi08g00770 362 MobiDBLite consensus disorder prediction 122 142 - -
Lsi08g00770 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 8 361 - -
Lsi08g00770 362 MobiDBLite consensus disorder prediction 72 159 - -
Lsi08g00770 362 SUPERFAMILY AF0104/ALDC/Ptd012-like 170 287 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g02421 Lsi08g00770 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02421 Lsi-Chr4:31318792 Lsi08g00770 Lsi-Chr8:16089755 5.31E-118 dispersed
Lsi07g01209 Lsi-Chr7:17617563 Lsi08g00770 Lsi-Chr8:16089755 9.60E-44 dispersed
Lsi08g00770 Lsi-Chr8:16089755 Lsi09g00368 Lsi-Chr9:3836578 1.44E-62 dispersed
Lsi08g00770 Lsi-Chr8:16089755 Lsi09g01558 Lsi-Chr9:23699625 3.68E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00770 - - csv:101211767 552.362