Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00777 ATGTTATCCGATACACAAGCTGAATTGGAATATCTTCATCAAGATTTTGACGTTTTGAGCATGTCGAAACGGCTCATGAGAAGCATGAGCCAGAAATTGAGGAGGAAGACTAACAAAGGTGTTGCTGAGGAAGAGGATATTTCAAGGGGAATATCTTTGAGATGTCTTACATTATATGGTAGAGGTGGAGGTTGCAAAGTTGGTGCTGACACTGGTGAGGAAATTGGTGATCCAGGCAGTAGAAGAAGATCCAGTGCCAGTGAGGAAGGTAAGGGATATAAATCATTGTTCGGTACTGAAGAAAATAGTGTGGATTGCTTCTCATATGGTGTAAAGGAAAGATTTCGTAAAAAACAAAGCCCAAAGCATTCTCAACTTCGGGACTCTACAAGGAACAGTGACGTTCATATTTTTCTTCCTGATGACATTCTGGAAATGTGCTTGATGAGGCTTCCCATTACGAGTCTTATGAATGCTCGCCTTGTATGCAAAAAGTGGAGATATTTGACTAGCACTCGTCGGTTTTTACAAATGAGACAGGAATGTTTATATCAGACTCCATGGATATTTTTATTTGGTGCTGTTAAAGAGGGCTATTGCTCCGGCGAGATACATGCACTGGATGTATCTCTAAAGCAATGGCATAGAATAGATGCTGATATCCTCAAGGGAAGGTTTATGTTCTCTATAGCTAGTATCCAGGATGATATATGTATCGTTGGTGGATGTTCTAGCTTGACCAACTTTGGGAAAGTAGATAAGAGCTCCTTCAGGACACATAAAGGGGTCTTAGTGTTTAGTCCTTTAACTAAATCTTGGCGCAAAATTGCATCTATGAAGTATGCCAGATCAATGCCTATATTGGGAACTTCTGAGGTCAACTCAGAGTTTTCAGTAGTTCAGAGCCATCATAATCGGCAAGATAGACGTTATTTGAGATCACGTGCCGGTGGTTCATTGGATGTTTATGAGGATCCTCACAGGCTCTCGCTAAGACGTCAAGTCAGAAATCCTGTGGAAGACAATGATGTTTCAATGTTGTCTAATAGGAAGTCATATAAGTTTATTCGACAAAAGAGTGATCAGACTCGTGCAAAAGGACATCGTAGGTTTGTGATTATTGCTATAGGGGGTCTAGGATCTTGGGATGAGCCGATAGATTCAGGAGAGATATATGATTCCTCATCAAATAAATGGACAGAAATTCAGAGGCTGCCTGTAGATTTCGGTATTATATGTTCTGGGGTTGTCTGCAATGGGATCTTCTATGTTTATTCTGAGACAGACAGACTTGCAGGTTATGACATCGAAAGAGGCTTTTGGATTGGAATCCAAACATCTCCATTCCCGCCTCGTGTTCATGAGTACTACCCCAAACTCGTATCCTCTAATGGTCGGCTGTTCATGCTTTCCGTCTCCTGGTGTGAAGGGGATGGACAAATAGGGCAGAGAAACAAGGCTGTGAGGAAACTGTGGGAGTTAGATCTCACGTACCTCACCTGGACGGAGGTATCAGTGCATCCCGATGCGCCAATGGACTGGAATGCTGCATTTGTTGCTGATAGAAACCTTATATTTGGAATTGAAATGTTCAAAATCTTCGGCCAGGTACTGGACTTTTTGACAGTGTGTGACATCTCCAATGCAGTATCAGACTGGAATCACATTTCGAGAACTCGTGTAACTCATGAAATGGATGCTTCTTCCTGCTTGACCAAATCAATGGCAGTCCTCCATCTATAA 1743 42.0 MLSDTQAELEYLHQDFDVLSMSKRLMRSMSQKLRRKTNKGVAEEEDISRGISLRCLTLYGRGGGCKVGADTGEEIGDPGSRRRSSASEEGKGYKSLFGTEENSVDCFSYGVKERFRKKQSPKHSQLRDSTRNSDVHIFLPDDILEMCLMRLPITSLMNARLVCKKWRYLTSTRRFLQMRQECLYQTPWIFLFGAVKEGYCSGEIHALDVSLKQWHRIDADILKGRFMFSIASIQDDICIVGGCSSLTNFGKVDKSSFRTHKGVLVFSPLTKSWRKIASMKYARSMPILGTSEVNSEFSVVQSHHNRQDRRYLRSRAGGSLDVYEDPHRLSLRRQVRNPVEDNDVSMLSNRKSYKFIRQKSDQTRAKGHRRFVIIAIGGLGSWDEPIDSGEIYDSSSNKWTEIQRLPVDFGIICSGVVCNGIFYVYSETDRLAGYDIERGFWIGIQTSPFPPRVHEYYPKLVSSNGRLFMLSVSWCEGDGQIGQRNKAVRKLWELDLTYLTWTEVSVHPDAPMDWNAAFVADRNLIFGIEMFKIFGQVLDFLTVCDISNAVSDWNHISRTRVTHEMDASSCLTKSMAVLHL 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16153387 16155129 + Lsi08G007770.1 Lsi08g00777 668703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00777 580 Pfam Kelch motif 373 404 IPR006652 GO:0005515
Lsi08g00777 580 PANTHER OS09G0555300 PROTEIN 1 580 - -
Lsi08g00777 580 MobiDBLite consensus disorder prediction 75 89 - -
Lsi08g00777 580 MobiDBLite consensus disorder prediction 70 92 - -
Lsi08g00777 580 ProSiteProfiles F-box domain profile. 133 179 IPR001810 GO:0005515
Lsi08g00777 580 SUPERFAMILY Kelch motif 187 527 IPR015915 GO:0005515
Lsi08g00777 580 Pfam F-box domain 139 175 IPR001810 GO:0005515
Lsi08g00777 580 Gene3D - 175 323 IPR015915 GO:0005515
Lsi08g00777 580 Gene3D - 361 568 IPR015915 GO:0005515
Lsi08g00777 580 SUPERFAMILY F-box domain 138 201 IPR036047 GO:0005515
Lsi08g00777 580 Gene3D - 138 174 - -
Lsi08g00777 580 PANTHER OS09G0555300 PROTEIN 1 580 - -
Lsi08g00777 580 SMART fbox_2 139 179 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00777 - - - csv:101217599 1127.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00777 Lsi-Chr8:16153387 Lsi02g00895 Lsi-Chr2:8522453 2.04E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g74 . . . . . . . . Cmo05g00989 Cmo12g00622 . . . Car12g00663 . . Cpe07g00596 Bhi04g01221 . . . . . . Cla08g00935 Cam08g1382 Cec08g0963 Cco08g1082 Clacu08g1089 . Cre08g0872 . . Cone17ag1463 Cone20ag0013 . . . Cme03g01334 . Blo18g00741 . Bda01g01565 Bpe02g01759 . Bma01g00698 . . . . Cma12g00686 Cma05g00969 Car05g00853 . Cpe11g00781 . . . . . . . . . . . . . . . Lsi08g00777 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007825 1 2 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi08g00777 Lsi_Chr08 FPKM 0.534247 0.0 0.0 0.333508 0.722677 2.985242 2.353561 0.750708 0.59122 0.372384