Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi08g00778 ATGGCAGAGAGTTGGGATGGAAGTTATGATGACTCTGGAAGTATATCAGATGAGAGCAGTTATTATGCGAGACTGCATATTGAACCTATTTATGACTCGTTTGTGTGCCCTTTAACGAAGCAAGTAATGAGGGATCCTGTTACTATAGAAAGTGGGCAAACATTTGAACGTGCGGCCATTGAAATGTGGTTCAACGAATGCAAGGAAAGTAGGAGGAGGCCAATCTGTCCAATGACACTTAAAGAATTAAGAAGCACGGATCTGAATCCCAGTATTGCTCTGCGGAATACTATTGAAGAGTGGACTGCTAGGAATGAAGCTGTTCAGCTAGATATGGCTCGCAAGTCACTTAACTTGGGAAGTCCAGAAAATGAAACTTTGGGATCTTTGAAATATGTTCAGCATGTATGCCAAAAGGGTTTGTCAAGGCACATCGCACGAAATGCTGGGTTAATACCTATGATTGTTAGCTTATTGAAGAGTACCAATCGAAAAGTCCAGTTTAGAGCTTTGGAAACCCTTAGAATCGTGGCACAAGAAGACAATGATTGCAAGGTTGATATGTTAGCTGAAGGTGACACTCTTCACACAGTAGTAAAGTTCTTGCGTCATGAGCGTTCAAGGGAGAAGGAGGAAGCTGTAGCTTTGCTGTATGAGCTTTCCAAGTCTGAAGCCTTGTGTGAAGAGATTGGTTCAGTTAATGGGGCTATTCTTATATTAGTTGGAATGTCGAGCAGCAAATCTGAGAACATCACCACGGTTGAAAATGCTGATAGAACATTAGAAAACCTGGAGAAATGTGAGAATAATATTCGACAGATGGCTGAATATGGTAGACTGAGGCCTCTTCTGACACAGATTCTTGAAGGCCCGCCAGAAACTAAACATTCCATGGCTGCACATTTGGGCGAGCTAGTTCTAAATAACGATGTAAAACTCTTTGTGGCTCAGACTGTGGGATCGTCTCTAATTAATATCATGAGAAGTGGTGATAAGCAGTCAAAAGAAGCTGCATTGAAAGCCTTGAACCAGATATCATCTTTTGAGGCTAGTGCAAGAGTTTTGGTTCAGGAAGGGATACTTCCACCTCTCGTGAAGGATCTTTTCACAGTTGGTTCGAATCTACTTCCCATGAAACTAAAAGAAGTATCTGCAACAATTCTTGCCAATGTTGTGAGCTCAGGCTGTGATTTCAATTCCATTCCAGTGGAACCTAATAATCAGACTACACTTGTCTCTGAAAATACTGTCCATAACCTGCTACAACTCATTAGCAATACTGGTCCAGCCATTGAATGCAAGCTTCTCCAGGTTCTTGTTGGACTTACAAGTTCTCCTTCAAGTATTTCAAGTATTGTTAATGCCATTAAAAGCTCTGGTGCAATTATCAGCTTGGTTCAGTTTATTGAGGCCCCACAGCTGGACTTGCGTGTTTCTGCTATAAAGCTCCTCCAGAACATCTCCCCACACTTAAGTCAGGAGCTAGCAGATGCCCTACGTGGTTCAGTTGGCCAGCTGAGCAGTTTATTTAGAATCATAGCAGAAAATACTGGAATCACAGAAGAACAAGCAGCTGCTGTGGGGCTTCTAGCTGATCTCCCTGAAATGGATTTAGGCCTCTCCAGGCAGATGCTTGATGAAGGAGCTTTTGAGTTGGTCTACCTTAGAATTGTTCAACTCCGCCAAGGGGAGACTAGGGGTGGCCGATTTTTAACACCATTCCTTGAAGGCCTTGTCCGAATTCTTGCGAGGATTACATTTATATTGCCTGCTGAGCCTGATGCTCTTGCATTTTGTCGCAGGCATAATCTTGCTGCTTTATTCATAGAACTGCTTCAGTCTAATGGACTTGACAATCTGCAGATGGTTTCTGCCATGGCATTGGAAAACTTATCTCTAGAATCCAAAAATTTGACTCAGTTACCTACGCTTCCGGAACCTGGATTTTGTGCCTCAATTTTTCCATGTCTCAGCGCACAACCAGTGCTGACAGGGCTATGTCCTCTCCACCGAGGTACATGTACTTTGAGGGAAAGTTTCTGTCTTTTGGAAGGTAAGGCAGTGGACAAATTGGTAGCCCTCTTAGATCACACAAGTGAGAAGGTCGTCGAGGCAGCACTTGCAGCACTATCTACTTTATTGGACGATGGGGTTGACGTTGAGAAGGGGGTGAACATTTTGCACAACGCAGATGGGGTTCAACCTATATTTAATGTGTTGCTTGAAAACCGTTCAGAGAATCTGATGAGAAGGGCCGTTTGGACAGTCGAGAGGCTGTTGCGCACAGACGACATCGCAATCGAATTCTCAAATAATCCAAAGGTAAGTACAGCTCTTGTTGATGCCTTCCAGCATGGTGACTACAAAACCAAGCAAATTGCTGAGCGTGCCTTAAGACATGTTGATAAGTTACCCAACTTCTCCAATATATTTCCTAATCCTAGTAATATGGGATAA 2457 43.14 MAESWDGSYDDSGSISDESSYYARLHIEPIYDSFVCPLTKQVMRDPVTIESGQTFERAAIEMWFNECKESRRRPICPMTLKELRSTDLNPSIALRNTIEEWTARNEAVQLDMARKSLNLGSPENETLGSLKYVQHVCQKGLSRHIARNAGLIPMIVSLLKSTNRKVQFRALETLRIVAQEDNDCKVDMLAEGDTLHTVVKFLRHERSREKEEAVALLYELSKSEALCEEIGSVNGAILILVGMSSSKSENITTVENADRTLENLEKCENNIRQMAEYGRLRPLLTQILEGPPETKHSMAAHLGELVLNNDVKLFVAQTVGSSLINIMRSGDKQSKEAALKALNQISSFEASARVLVQEGILPPLVKDLFTVGSNLLPMKLKEVSATILANVVSSGCDFNSIPVEPNNQTTLVSENTVHNLLQLISNTGPAIECKLLQVLVGLTSSPSSISSIVNAIKSSGAIISLVQFIEAPQLDLRVSAIKLLQNISPHLSQELADALRGSVGQLSSLFRIIAENTGITEEQAAAVGLLADLPEMDLGLSRQMLDEGAFELVYLRIVQLRQGETRGGRFLTPFLEGLVRILARITFILPAEPDALAFCRRHNLAALFIELLQSNGLDNLQMVSAMALENLSLESKNLTQLPTLPEPGFCASIFPCLSAQPVLTGLCPLHRGTCTLRESFCLLEGKAVDKLVALLDHTSEKVVEAALAALSTLLDDGVDVEKGVNILHNADGVQPIFNVLLENRSENLMRRAVWTVERLLRTDDIAIEFSNNPKVSTALVDAFQHGDYKTKQIAERALRHVDKLPNFSNIFPNPSNMG 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16156667 16168334 - Lsi08G007780.1 Lsi08g00778 668704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi08g00778 818 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 114 IPR013083 -
Lsi08g00778 818 SUPERFAMILY RING/U-box 18 111 - -
Lsi08g00778 818 Gene3D - 579 808 IPR011989 -
Lsi08g00778 818 CDD RING-Ubox_PUB 34 79 IPR045210 -
Lsi08g00778 818 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 813 - -
Lsi08g00778 818 SMART arm_5 719 761 IPR000225 GO:0005515
Lsi08g00778 818 SMART arm_5 674 715 IPR000225 GO:0005515
Lsi08g00778 818 SMART arm_5 348 393 IPR000225 GO:0005515
Lsi08g00778 818 SMART arm_5 449 489 IPR000225 GO:0005515
Lsi08g00778 818 SMART arm_5 181 222 IPR000225 GO:0005515
Lsi08g00778 818 SMART arm_5 267 307 IPR000225 GO:0005515
Lsi08g00778 818 SMART arm_5 308 347 IPR000225 GO:0005515
Lsi08g00778 818 SMART arm_5 592 633 IPR000225 GO:0005515
Lsi08g00778 818 SMART arm_5 139 179 IPR000225 GO:0005515
Lsi08g00778 818 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 813 - -
Lsi08g00778 818 Gene3D - 115 536 IPR011989 -
Lsi08g00778 818 SUPERFAMILY ARM repeat 150 758 IPR016024 -
Lsi08g00778 818 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Lsi08g00778 818 Coils Coil 254 277 - -
Lsi08g00778 818 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Lsi08g00778 818 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00045 Lsi-Chr4:606385 Lsi08g00778 Lsi-Chr8:16156667 2.61E-31 dispersed
Lsi04g00332 Lsi-Chr4:3381127 Lsi08g00778 Lsi-Chr8:16156667 1.10E-120 dispersed
Lsi08g00778 Lsi-Chr8:16156667 Lsi03g00296 Lsi-Chr3:3597088 2.60E-17 dispersed
Lsi08g00778 Lsi-Chr8:16156667 Lsi02g01363 Lsi-Chr2:18368167 6.00E-15 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi08g00778 - - csv:101217370 1462.97